CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02630

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g02630 828217 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.21 15.8 At3g04310 819586 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.10 3.4 At5g52030 835278 TraB protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP S.X. H.G.
0.06 1.4 At5g64280 836549 DiT2.2 (dicarboxylate transporter 2.2) F:oxoglutarate:malate antiporter activity;P:malate transport, sodium ion transport;C:chloroplast, membrane;BOPAFMV S.X. H.G.
0.05 1.1 At1g06240 837134 unknown protein F:unknown;P:biological_process unknown;C:unknown;BOPFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.2 99.7 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
21.8 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.3 99.5 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.8 99.5 GSM133038 2783 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
16.5 99.5 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
16.2 99.5 GSM131691 ATGE_78_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
15.1 99.4 GSM133056 2798 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
15.0 99.4 GSM131693 ATGE_78_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
14.0 99.4 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.8 99.4 GSM133044 2786 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 1e-27 125 At1g01540 839533 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.16 9e-19 95 At4g34500 829601 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.14 2e-13 77 At4g01330 828117 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.06 3e-9 63 At1g09440 837467 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.13 3e-6 54 At3g17420 821006 GPK1 serine/threonine protein kinase-like protein C.G. S.X.
0.11 3e-6 54 At1g56720 842128 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 8e-17 89 Glycine max Gma.1097.1.S1_at BM092770 - - 5e-17 At4g02630 protein kinase family protein C.G. S.X.
0.19 3e-17 89 Hordeum vulgare Contig13522_at Contig13522 - - 4e-17 At4g02630 protein kinase family protein C.G. S.X.
0.14 4e-4 48 Oryza sativa OsAffx.14981.1.S1_at - - - 0 C.G. S.X.
0.43 3e-41 171 Populus trichocarpa PtpAffx.221191.1.S1_at pmrna37880 hypothetical protein - 2e-41 At4g02630 protein kinase family protein C.G. S.X.
0.07 3e-9 63 Triticum aestivum Ta.21659.1.A1_at CA697894 - - 2e-9 At4g02630 protein kinase family protein C.G. S.X.
0.22 3e-34 145 Vitis vinifera 1610530_at CB971103 hypothetical protein LOC100243696 - 7e-34 At4g02630 protein kinase family protein C.G. S.X.
0.18 1e-22 107 Zea mays Zm.18376.1.A1_at AI615179 hypothetical protein LOC100274438 - 2e-22 At4g02630 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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