CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02620

Gene name vacuolar ATPase subunit F family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.69 82.9 At4g02620 828221 vacuolar ATPase subunit F family protein F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPA S.X. H.G.
0.86 93.1 At3g52730 824439 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial envelope, mitochondrion, mitochondrial respiratory chain complex III, membrane;PFMO S.X. H.G.
0.81 90.4 At2g20820 816613 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.79 89.1 At1g67350 843056 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;P S.X. H.G.
0.76 87.4 At4g30010 829124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;P S.X. H.G.
0.76 87.4 At1g08480 837369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, plastid, vacuole;P S.X. H.G.
0.75 86.9 At3g47833 823938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.74 86.1 At4g00585 828026 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMO S.X. H.G.
0.70 83.5 At3g08610 820008 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P S.X. H.G.
0.67 81.6 At1g22840 838889 CYTC-1 (CYTOCHROME C-1) Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.7 99.5 GSM133777 Lindsey_1-4_globular-basal_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.5 99.5 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.9 99.4 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.3 99.4 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.1 99.4 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
13.9 99.4 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
13.5 99.4 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
13.0 99.4 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
12.4 99.3 GSM184836 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE7639 Expression analysis of root developmental zones after treatment with salt
11.5 99.3 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-2 38 At1g10980 837641 - F:unknown;P:biological_process unknown;C:vacuole;MFPO C.G. S.X.
0.01 7e-1 34 At3g04910 819651 WNK1 (WITH NO LYSINE (K) 1) Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm. C.G. S.X.
0.01 3e+0 32 At4g33150 829452 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme F:unknown;P:unknown;C:unknown;OBFMPA C.G. S.X.
0.04 3e+0 32 At4g38280 829985 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.04 3e+0 32 At4g21310 827879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 3e+0 32 At4g14605 827109 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 3e-47 188 Glycine max Gma.7097.1.S1_at BG047373 - - 5e-47 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.37 3e-29 127 Hordeum vulgare Contig4136_at Contig4136 - - 2e-28 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.50 5e-28 125 Oryza sativa Os02g0824700 C98270 - Vacuolar H+-transporting two-sector ATPase, Fsubunit family protein 5e-28 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.35 9e-32 137 Populus trichocarpa Ptp.1975.1.S1_at CV281968 hypothetical protein - 2e-31 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.20 9e-16 83 Triticum aestivum Ta.28673.1.S1_at BJ286336 Vacuolar ATPase subunit F - 3e-15 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1608231_at CB979713 - - 1e+0 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.30 4e-19 93 Zea mays Zm.6205.1.A1_at CK985870 vacuolar ATP synthase subunit F - 2e-18 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
01100 Metabolic pathways
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