Gene omics information

Query gene ID At4g02560
Gene name LD (luminidependens)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g02560827904LD (luminidependens)Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants.S.X.H.G.
0.5368.6At4g24680828570-F:molecular_function unknown;P:unknown;C:unknown;OMFBPVAS.X.H.G.
0.4659.8At3g22220821786hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMS.X.H.G.
0.4457.2At3g27530822375GC6 (golgin candidate 6)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.S.X.H.G.
0.2624.4At5g37370833711ATSRL1encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.S.X.H.G.
0.2319.3At3g62240825397zinc finger (C2H2 type) family proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPVS.X.H.G.
0.040.9At3g23900821973RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
89.999.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
80.999.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
75.999.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
73.899.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
73.299.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
68.799.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
62.899.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
59.599.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.499.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.299.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-138At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFC.G.S.X.
0.011e+036At5g65080836632MAF5 (MADS AFFECTING FLOWERING 5)Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.C.G.S.X.
0.011e+036At5g57060835810unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+036At4g21600828246ENDO5 (endonuclease 5)Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).C.G.S.X.
0.011e+036At4g25540828659MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).C.G.S.X.
0.011e+036At4g36940829848NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1)F:nicotinate phosphoribosyltransferase activity;P:pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage;C:cellular_component unknown;BMOAPFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxGmaAffx.17686.1.S1_atBF426170--2e+0At5g44730haloacid dehalogenase-like hydrolase family proteinC.G.S.X.
0.013e+034Hordeum vulgareHV10E20u_atHV10E20u--2e-2At1g47970unknown proteinC.G.S.X.
0.057e-448Oryza sativaOs01g0934300AK072640.1-Flowering-time protein isoform beta5e-4At4g02560LD (luminidependens)C.G.S.X.
0.146e-1377Populus trichocarpaPtpAffx.212055.1.S1_atpmrna23659hypothetical protein-3e-13At4g02560LD (luminidependens)C.G.S.X.
0.011e-140Triticum aestivumTa.1655.3.S1_x_atCA666874--4e+0At1g27220paired amphipathic helix repeat-containing proteinC.G.S.X.
0.014e-136Vitis vinifera1615472_atCB346188hypothetical LOC100243131-7e-11At1g48790mov34 family proteinC.G.S.X.
0.012e+034Zea maysZmAffx.848.1.A1_atAI770631--8e-1At1g22720wall-associated kinase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009911Any process that activates or increases the frequency, rate or extent of flower development.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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