CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02510

Gene name TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At4g02510 827934 TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane. S.X. H.G.
0.65 79.6 At3g10160 820179 DFC (DHFS-FPGS HOMOLOG C) Encodes a protein with tetrahydrofolylpolyglutamate synthase activity that is located in the mitochondrial matrix. S.X. H.G.
0.63 78.1 At3g02450 821139 cell division protein ftsH, putative F:in 6 functions;P:unknown;C:integral to membrane, chloroplast;BOMFPAV S.X. H.G.
0.55 70.6 At2g20020 816521 CAF1 Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns. S.X. H.G.
0.53 68.6 At3g02060 821294 DEAD/DEAH box helicase, putative F:transcription factor activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFPAV S.X. H.G.
0.48 62.5 At1g74850 843824 PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. S.X. H.G.
0.46 59.8 At2g41720 818771 EMB2654 (EMBRYO DEFECTIVE 2654) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBA S.X. H.G.
0.44 57.2 At1g06950 837205 TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. S.X. H.G.
0.44 57.2 At5g35210 833475 peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein F:protein binding, DNA binding, metalloendopeptidase activity, zinc ion binding;P:proteolysis, regulation of transcription, DNA-dependent;C:nucleus, chloroplast envelope;MPOFBA S.X. H.G.
0.43 55.3 At3g16290 820876 EMB2083 (embryo defective 2083) F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.1 99.2 E-MEXP-849-raw-cel-1181980990
11.0 99.2 E-MEXP-849-raw-cel-1181980998
10.6 99.2 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
9.7 99.1 E-MEXP-849-raw-cel-1181980982
7.8 98.9 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.4 98.6 GSM133315 RIKEN-LI3A GSE5701 AtGenExpress: Basic hormone treatment of seeds
6.0 98.5 E-MEXP-849-raw-cel-1181981014
6.0 98.5 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
5.8 98.4 GSM133313 RIKEN-LI2A GSE5701 AtGenExpress: Basic hormone treatment of seeds
5.8 98.4 GSM245919 csn3-1 mutant dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 6e-10 67 At4g02482 827966 chloroplast outer envelope GTP-binding protein, putative F:GTP binding;P:biological_process unknown;C:chloroplast outer membrane;PO C.G. S.X.
0.01 9e-3 44 At3g48710 824032 - F:unknown;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.01 4e-2 42 At1g15800 838149 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e-2 42 At1g08520 837374 CHLD F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA C.G. S.X.
0.01 1e-1 40 At5g65440 836669 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PO C.G. S.X.
0.01 1e-1 40 At1g24300 839046 - F:unknown;P:unknown;C:chloroplast;OMFPBV C.G. S.X.
0.01 6e-1 38 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-8 61 Glycine max GmaAffx.91256.1.S1_at CF806981 - - 6e-9 At4g02510 TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) C.G. S.X.
0.02 3e-4 48 Hordeum vulgare Contig6980_at Contig6980 - - 2e-4 At4g02510 TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) C.G. S.X.
0.04 5e-3 46 Oryza sativa Os05g0151400 AK102924.1 - Chloroplast protein import component Toc86/159domain containing protein 2e-3 At4g02510 TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) C.G. S.X.
0.06 1e-11 73 Populus trichocarpa PtpAffx.218660.1.S1_at pmrna34357 hypothetical protein - 5e-12 At4g02510 TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) C.G. S.X.
0.01 6e-1 38 Triticum aestivum Ta.28673.1.S1_at BJ286336 Vacuolar ATPase subunit F - 3e-15 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.07 3e-18 93 Vitis vinifera 1612893_at CF513602 hypothetical protein LOC100243553 - 2e-18 At4g02510 TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) C.G. S.X.
0.03 1e+0 36 Zea mays Zm.5881.1.A1_at CA401815 - - 9e-8 At2g16640 TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045036 The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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