CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02480

Gene name AAA-type ATPase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.52 67.4 At4g02480 827979 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV S.X. H.G.
0.82 90.9 At1g04300 839551 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVA S.X. H.G.
0.63 78.1 At3g15290 820760 3-hydroxybutyryl-CoA dehydrogenase, putative F:coenzyme binding, oxidoreductase activity, 3-hydroxybutyryl-CoA dehydrogenase activity, binding, catalytic activity;P:fatty acid metabolic process, metabolic process;C:peroxisome;BOMAFP S.X. H.G.
0.59 74.7 At3g05670 819734 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MOFBPVA S.X. H.G.
0.56 73.0 At5g43930 834415 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:chloroplast;MBFOPA S.X. H.G.
0.53 68.6 At1g11480 837691 eukaryotic translation initiation factor-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB S.X. H.G.
0.50 65.3 At4g19110 827649 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA S.X. H.G.
0.44 57.2 At3g58040 824973 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) Encodes a RING finger domain containing protein that interacts with AtRAP2.2. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.9 99.7 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
18.4 99.5 GSM133118 RIKEN-YAMAUCHI1B GSE5687 AtGenExpress: Different temperature treatment of seeds
12.1 99.3 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
11.9 99.3 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
11.8 99.3 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
11.1 99.2 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.2 99.2 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
10.1 99.2 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.7 99.1 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.7 99.1 E-MEXP-509-raw-cel-829148703
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 0 1237 At1g02890 839507 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAV C.G. S.X.
0.05 7e-28 127 At4g24860 828589 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAV C.G. S.X.
0.04 1e-7 59 At1g62130 842509 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:chloroplast;OBMFPAV C.G. S.X.
0.02 3e-5 52 At4g27680 828882 MSP1 protein, putative / intramitochondrial sorting protein, putative F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OBMFPAV C.G. S.X.
0.03 1e-4 50 At5g52882 5008305 ATP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.01 1e-4 50 At5g58290 835941 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA, C.G. S.X.
0.04 1e-4 50 At4g28000 828913 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 3e-89 331 Glycine max Gma.7877.2.S1_at BU546857 - - 9e-59 At1g02890 AAA-type ATPase family protein C.G. S.X.
0.20 7e-51 202 Hordeum vulgare Contig7960_at Contig7960 - - 5e-51 At4g02480 AAA-type ATPase family protein C.G. S.X.
0.15 3e-68 262 Oryza sativa Os07g0672500 AK119940.1 - AAA ATPase, central region domain containingprotein 7e+0 At5g51010 rubredoxin family protein C.G. S.X.
0.20 1e-76 289 Populus trichocarpa PtpAffx.157376.1.S1_at CN549882 hypothetical protein - 1e-77 At4g02480 AAA-type ATPase family protein C.G. S.X.
0.19 2e-46 188 Triticum aestivum Ta.2703.1.S1_at CD452813 - - 2e-46 At4g02480 AAA-type ATPase family protein C.G. S.X.
0.20 1e-69 264 Vitis vinifera 1606715_at CB981978 hypothetical protein LOC100260666 - 1e-69 At4g02480 AAA-type ATPase family protein C.G. S.X.
0.21 6e-54 212 Zea mays Zm.13693.1.S1_at AY106770.1 - - 6e-54 At4g02480 AAA-type ATPase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage