Gene omics information

Query gene ID At4g02440
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At4g02440828008EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.S.X.H.G.
0.4761.2At1g76920844027F-box family protein (FBX3)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PS.X.H.G.
0.4355.3At4g05060825848vesicle-associated membrane family protein / VAMP family proteinF:structural molecule activity;P:biological_process unknown;C:chloroplast;PMFOS.X.H.G.
0.4050.8At4g21450826300vesicle-associated membrane family protein / VAMP family proteinF:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBVS.X.H.G.
0.3948.4At2g45980819206unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3745.0At1g64040842708TOPP3Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.S.X.H.G.
0.3541.6At5g05930830478guanylyl cyclase-related (GC1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOAS.X.H.G.
0.3338.1At2g03330814862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.3338.1At3g61180825290zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBS.X.H.G.
0.3235.7At2g21240816663BPC4 (BASIC PENTACYSTEINE 4)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.399.4GSM142779AM002_ATH1_A4-MCCOR-GDAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
9.999.1GSM67112Arabidopsis_Seedling04GSE3056Arabidopsis Pollination Study
9.199.1GSM40553Total RNA - hypoxia stressGSE2218Changes in transcript abundance and association with large polysomes in response to hypoxia stress
8.799.0GSM131207AtGen_D-41_3-DS_REP3_ATH1GSE5617AtGenExpress: Light treatments
8.499.0GSM133754Turner_A-8-Turne-WT-Base2_SLDGSE5729Role of COV in vascular patterning
8.399.0GSM25316648h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
8.299.0GSM142778AM002_ATH1_A3-MCCOR-GFAGSE6169Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.025e-136At4g39060830061-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBC.G.S.X.
0.035e-136At2g45450819153ZPR1 (LITTLE ZIPPER 1)ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.C.G.S.X.
0.025e-136At2g26160817156-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.025e-136At1g15080838072LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.C.G.S.X.
0.025e-136At1g31885840079transporterF:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAVC.G.S.X.
0.012e+034At5g05840830469unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e+034At5g41920834197scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBC.G.S.X.
0.022e+034At5g28850833004calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.108e-1065Glycine maxGma.9702.1.S1_atCD394045--7e-10At4g02440EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)C.G.S.X.
0.022e-136Hordeum vulgareContig26236_atContig26236--1e-6At1g76820GTP binding / GTPaseC.G.S.X.
0.036e-240Oryza sativaOsAffx.21385.1.S1_at---0C.G.S.X.
0.154e-24113Populus trichocarpaPtp.390.2.A1_s_atBP931046hypothetical protein-2e-24At4g02440EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)C.G.S.X.
0.045e-136Triticum aestivumTa.17974.1.A1_atCA623388--4e-11At1g56045ribosomal protein L41 family proteinC.G.S.X.
0.145e-2097Vitis vinifera1622097_atCF405034hypothetical protein LOC100250321-8e-20At4g02440EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)C.G.S.X.
0.032e-136Zea maysZm.14844.1.A1_atAY110776.1--2e-9At1g56045ribosomal protein L41 family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010099Any process that modulates the rate or extent of photomorphogenesis.
XGO:0048366The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
XGO:0048573A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
XGO:0009585The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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