CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02440

Gene name EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g02440 828008 EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta. S.X. H.G.
0.47 61.2 At1g76920 844027 F-box family protein (FBX3) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;P S.X. H.G.
0.43 55.3 At4g05060 825848 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:chloroplast;PMFO S.X. H.G.
0.40 50.8 At4g21450 826300 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV S.X. H.G.
0.39 48.4 At2g45980 819206 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.37 45.0 At1g64040 842708 TOPP3 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. S.X. H.G.
0.35 41.6 At5g05930 830478 guanylyl cyclase-related (GC1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOA S.X. H.G.
0.33 38.1 At2g03330 814862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.33 38.1 At3g61180 825290 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB S.X. H.G.
0.32 35.7 At2g21240 816663 BPC4 (BASIC PENTACYSTEINE 4) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.3 99.4 GSM142779 AM002_ATH1_A4-MCCOR-GDA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
11.2 99.2 E-MEXP-1094-raw-cel-1379507513
9.9 99.1 GSM67112 Arabidopsis_Seedling04 GSE3056 Arabidopsis Pollination Study
9.6 99.1 E-MEXP-1299-raw-cel-1519902871
9.1 99.1 GSM40553 Total RNA - hypoxia stress GSE2218 Changes in transcript abundance and association with large polysomes in response to hypoxia stress
8.7 99.0 GSM131207 AtGen_D-41_3-DS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
8.4 99.0 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
8.3 99.0 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
8.2 99.0 GSM142778 AM002_ATH1_A3-MCCOR-GFA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
7.9 98.9 E-MEXP-1299-raw-cel-1519902780
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-1 36 At4g39060 830061 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.03 5e-1 36 At2g45450 819153 ZPR1 (LITTLE ZIPPER 1) ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity. C.G. S.X.
0.02 5e-1 36 At2g26160 817156 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 5e-1 36 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. C.G. S.X.
0.02 5e-1 36 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV C.G. S.X.
0.01 2e+0 34 At5g05840 830469 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g41920 834197 scarecrow transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PB C.G. S.X.
0.02 2e+0 34 At5g28850 833004 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 8e-10 65 Glycine max Gma.9702.1.S1_at CD394045 - - 7e-10 At4g02440 EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) C.G. S.X.
0.02 2e-1 36 Hordeum vulgare Contig26236_at Contig26236 - - 1e-6 At1g76820 GTP binding / GTPase C.G. S.X.
0.03 6e-2 40 Oryza sativa OsAffx.21385.1.S1_at - - - 0 C.G. S.X.
0.15 4e-24 113 Populus trichocarpa Ptp.390.2.A1_s_at BP931046 hypothetical protein - 2e-24 At4g02440 EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) C.G. S.X.
0.04 5e-1 36 Triticum aestivum Ta.17974.1.A1_at CA623388 - - 4e-11 At1g56045 ribosomal protein L41 family protein C.G. S.X.
0.14 5e-20 97 Vitis vinifera 1622097_at CF405034 hypothetical protein LOC100250321 - 8e-20 At4g02440 EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) C.G. S.X.
0.03 2e-1 36 Zea mays Zm.14844.1.A1_at AY110776.1 - - 2e-9 At1g56045 ribosomal protein L41 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010099 Any process that modulates the rate or extent of photomorphogenesis.
X GO:0048366 The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
X GO:0048573 A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
X GO:0009585 The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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