Gene omics information

Query gene ID At4g02390
Gene name APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g02390828049APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .S.X.H.G.
0.8994.6At5g48720834930XRI1 (X-RAY INDUCED TRANSCRIPT 1)Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.S.X.H.G.
0.6781.6At3g07800819971thymidine kinase, putativeF:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAFS.X.H.G.
0.6781.6At5g03780831726TRFL10 (TRF-LIKE 10)Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.S.X.H.G.
0.6176.7At5g20850832208ATRAD51Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
206.1100.0GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
188.9100.0GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
187.9100.0GSM131375AtGen_6-5511_Genotoxicstress-Shoots-12.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
179.0100.0GSM133951Murray_2-7_T12-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
164.8100.0GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
162.799.9GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
152.199.9GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
133.799.9GSM131381AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
129.699.9GSM131372AtGen_6-5412_Genotoxicstress-Shoots-6.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
126.099.9GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-861At2g31320817690PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2)Abiotic Stress-inducible gene.C.G.S.X.
0.011e-242At4g26190828725-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.012e-138At5g57130835819protein bindingF:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAMC.G.S.X.
0.022e-138At2g27480817293calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.011e+036At5g20510832173AL5 (ALFIN-LIKE 5)AL5 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.C.G.S.X.
0.011e+036At4g14820827139pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBC.G.S.X.
0.014e+034At5g09350830794PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2)Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta2. Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma. PI-4Kbeta2 is 83% identical to PI-4kbeta1 encoded by At5g64070. Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta1, leads to the formation of abnormal root hairs.C.G.S.X.
0.014e+034At5g40320834030DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMC.G.S.X.
0.014e+034At5g06590830547unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-1585Glycine maxGmaAffx.1866.2.S1_atBM271076--3e-16At4g02390APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)C.G.S.X.
0.141e-35151Hordeum vulgareContig19678_atContig19678--1e-35At4g02390APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)C.G.S.X.
0.121e-29133Oryza sativaOs.24852.1.A1_at---0C.G.S.X.
0.242e-24115Populus trichocarpaPtpAffx.211756.1.S1_atpmrna23039--1e-24At4g02390APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)C.G.S.X.
0.123e-25117Triticum aestivumTa.3786.2.S1_atBJ222440--9e-26At4g02390APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)C.G.S.X.
0.011e+034Vitis vinifera1617224_atCB915321--4e+0At4g30380EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)C.G.S.X.
0.061e-757Zea maysZm.163.1.A1_atAJ222588.1--3e-7At4g02390APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006471The transfer, from NAD, of ADP-ribose to protein amino acids.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
03410Link to KEGG PATHWAYBase excision repair
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