CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02290

Gene name AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At4g02290 828080 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF S.X. H.G.
0.36 43.6 At1g60060 842300 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMB S.X. H.G.
0.33 38.1 At1g27370 839626 squamosa promoter-binding protein-like 10 (SPL10) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM S.X. H.G.
0.27 26.2 At1g75090 843846 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF S.X. H.G.
0.25 22.6 At1g25510 839137 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO S.X. H.G.
0.22 17.5 At3g18850 821418 LPAT5 F:acyltransferase activity;P:metabolic process;C:unknown;MBOFPV S.X. H.G.
0.20 14.4 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO S.X. H.G.
0.18 11.4 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. S.X. H.G.
0.18 11.4 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA S.X. H.G.
0.06 1.4 At5g51750 835249 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
95.3 99.9 GSM133769 Lindsey_1-21_torpedo-basal_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
89.4 99.9 GSM131644 ATGE_2_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
72.6 99.9 GSM131645 ATGE_2_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
59.7 99.8 GSM131643 ATGE_2_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
45.8 99.8 GSM131630 ATGE_58_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
40.4 99.8 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.8 99.7 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
32.6 99.7 GSM131632 ATGE_58_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
30.8 99.7 GSM131631 ATGE_58_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
24.0 99.6 GSM131628 ATGE_57_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 0 811 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. C.G. S.X.
0.14 1e-8 61 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. C.G. S.X.
0.11 2e-7 57 At1g22880 838893 CEL5 (CELLULASE 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF C.G. S.X.
0.12 8e-7 56 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF C.G. S.X.
0.06 3e-6 54 At3g43860 823499 AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.04 2e-4 48 At2g44550 819063 AtGH9B10 (Arabidopsis thaliana glycosyl hydrolase 9B10) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.10 3e-3 44 At4g39010 830056 AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.03 3e-3 44 At4g11050 826706 AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3) F:carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-10 67 Glycine max Gma.16122.1.S1_at CD413696 - - 4e-14 At1g02800 ATCEL2 C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig2102_at Contig2102 - - 5e+0 At5g30520 unknown protein C.G. S.X.
0.05 3e-5 52 Oryza sativa Os01g0312800 AK106887.1 - Endo-1,4-beta-glucanase precursor (EC 3.2.1.4) 3e-4 At1g02800 ATCEL2 C.G. S.X.
0.45 7e-76 286 Populus trichocarpa PtpAffx.211752.1.S1_x_at pmrna23027 hypothetical protein - 6e-76 At4g02290 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.110067.4.S1_at CA665779 - - 9e-1 At5g63150 unknown protein C.G. S.X.
0.13 1e-2 40 Vitis vinifera 1611330_at AY043236.1 cellulase CEL1-like - 1e-2 At4g02290 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.9621.1.A1_at BM333959 ethylene-responsive transcription factor 3 - 4e+0 At1g69490 NAP (NAC-like, activated by AP3/PI) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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