CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02280

Gene name SUS3 (sucrose synthase 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At4g02280 828081 SUS3 (sucrose synthase 3) Encodes a protein with sucrose synthase activity (SUS3). S.X. H.G.
0.94 96.7 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.91 95.6 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.91 95.6 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At5g42290 834234 transcription activator-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.88 94.0 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At5g60760 836197 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV S.X. H.G.
0.86 93.1 At2g42560 818856 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.86 93.1 At5g45310 834567 unknown protein F:unknown;P:unknown;C:endomembrane system;OMVBFPA S.X. H.G.
0.85 92.4 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
460.6 100.0 E-MEXP-1443-raw-cel-1581869573
454.6 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
262.1 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
192.8 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
152.6 99.9 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
149.8 99.9 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
148.1 99.9 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
141.8 99.9 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
118.0 99.9 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
115.6 99.9 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 2e-30 135 At3g43190 823393 SUS4 Encodes a protein with sucrose synthase activity (SUS4). C.G. S.X.
0.24 3e-26 121 At5g20830 832206 SUS1 (SUCROSE SYNTHASE 1) Encodes a protein with sucrose synthase activity (SUS1). C.G. S.X.
0.27 2e-24 115 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. C.G. S.X.
0.09 2e-8 61 At5g37180 833692 SUS5 Encodes a protein with sucrose synthase activity (SUS5). C.G. S.X.
0.07 1e-6 56 At1g73370 843672 SUS6 (SUCROSE SYNTHASE 6) Encodes a protein with sucrose synthase activity (SUS6). C.G. S.X.
0.01 8e-2 40 At5g36870 833654 ATGSL09 (glucan synthase-like 9) encodes a gene similar to callose synthase C.G. S.X.
0.01 8e-2 40 At3g14070 820622 CAX9 (CATION EXCHANGER 9) Involved in cation (K, Na and Mn) homeostasis and transport C.G. S.X.
0.01 3e-1 38 At1g48840 841306 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 4e-26 121 Glycine max Gma.17921.2.S1_s_at BM085020 - - 7e-27 At4g02280 SUS3 (sucrose synthase 3) C.G. S.X.
0.16 7e-10 65 Hordeum vulgare Contig460_s_at Contig460 sucrose synthase - 6e-12 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.23 4e-14 81 Oryza sativa Os03g0340500 AK102158.1 - Sucrose synthase 3e-14 At4g02280 SUS3 (sucrose synthase 3) C.G. S.X.
0.28 2e-24 115 Populus trichocarpa PtpAffx.23657.1.S1_s_at BP928698 hypothetical protein - 6e-42 At5g49190 SUS2 (SUCROSE SYNTHASE 2) C.G. S.X.
0.12 5e-6 54 Triticum aestivum Ta.93.1.S1_at M26672.1 sucrose synthase type 2 - 3e-26 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.27 5e-31 135 Vitis vinifera 1609402_at BQ794844 hypothetical protein LOC100267606 - 1e-30 At4g02280 SUS3 (sucrose synthase 3) C.G. S.X.
0.17 3e-15 83 Zea mays Zm.3478.1.S1_a_at AY124703.1 sucrose synthase2 - 4e-47 At5g49190 SUS2 (SUCROSE SYNTHASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005986 The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside.
L GO:0005985 The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.
L GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00021 Cellulose biosynthesis
00022 Biosynthesis and metabolism of sucrose
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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