CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02130

Gene name GATL6

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g02130 827438 GATL6 Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.42 53.9 At3g32930 823057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P S.X. H.G.
0.39 48.4 At3g52500 824415 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, membrane, plant-type cell wall;PMFO S.X. H.G.
0.38 46.7 At3g52155 824380 - F:unknown;P:unknown;C:chloroplast;OBP S.X. H.G.
0.35 41.6 At4g33670 829509 L-galactose dehydrogenase (L-GalDH) Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis S.X. H.G.
0.35 41.6 At2g26900 817231 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport, organic anion transport;C:membrane, chloroplast envelope;OBMPAF S.X. H.G.
0.33 38.1 At2g44870 819096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB S.X. H.G.
0.33 38.1 At2g02070 814738 AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOFPBAV S.X. H.G.
0.33 38.1 At3g02570 820656 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) Encodes a protein with phosphomannose isomerase activity. S.X. H.G.
0.32 35.7 At4g26510 828757 ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.3 99.8 GSM38670 DSNP GSE2268 Arabidopsis polysome microarray
17.9 99.5 GSM133055 2797 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
15.4 99.5 GSM297391 At.StarchSD.WTSS3.WTR1D8 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
13.4 99.4 GSM133052 2795 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
12.5 99.3 GSM297390 At.StarchSD.WTSS3.WTR1D4 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
12.3 99.3 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.2 99.3 GSM133054 2796 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
12.0 99.3 E-MEXP-838-raw-cel-1160704054
12.0 99.3 GSM297380 At.StarchSD.WTSS3.SS3R1D4 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
12.0 99.3 GSM133057 2504 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 9e-117 420 At1g02720 839475 GATL5 (GALACTURONOSYLTRANSFERASE 5) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.50 2e-15 83 At3g62660 825440 GATL7 (Galacturonosyltransferase-like 7) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.13 2e-10 67 At1g13250 837885 GATL3 (Galacturonosyltransferase-like 3) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.11 9e-9 61 At1g24170 839030 LGT9 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.10 9e-9 61 At1g70090 843345 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-12 73 Glycine max GmaAffx.18415.1.S1_at BI426447 - - 5e-5 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEc0009L17r2_at HVSMEc0009L17r2 - - 3e+0 At1g04778 unknown protein C.G. S.X.
0.03 2e-2 42 Oryza sativa Os03g0300900 AK119594.1 - Glycosyl transferase, family 8 protein 5e-9 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.19 1e-8 61 Populus trichocarpa PtpAffx.25163.2.A1_at CV230336 glycosyltransferase, CAZy family GT8 - 7e-21 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.07 5e-1 36 Triticum aestivum TaAffx.12563.1.A1_at BJ254471 - - 1e-3 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1609887_at CF205557.1 - - 1e-19 At5g53160 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.361.1.A1_at AI670571 - - 8e-1 At1g15800 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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