CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g02090

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g02090 827380 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At3g11550 820328 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At5g06200 830507 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
0.97 97.6 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
0.97 97.6 At4g20140 827760 GSO1 (GASSHO1) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. S.X. H.G.
0.95 97.0 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
0.95 97.0 At4g21340 827884 B70 F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, intracellular;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
787.1 100.0 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
579.6 100.0 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
576.3 100.0 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
501.9 100.0 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
359.5 100.0 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
178.8 100.0 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
132.7 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
129.8 99.9 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
124.5 99.9 GSM133993 Birnbaum_1-26_J0571-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
83.0 99.9 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 7e-2 38 At5g39870 833984 unknown protein F:unknown;P:unknown;C:endomembrane system;POBMA C.G. S.X.
0.01 3e-1 36 At5g55670 835661 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.03 3e-1 36 At5g42860 834297 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMB C.G. S.X.
0.02 3e-1 36 At3g19320 821466 leucine-rich repeat family protein F:protein binding;P:unknown;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 1e+0 34 At5g01560 830345 LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3) Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. C.G. S.X.
0.01 1e+0 34 At5g02400 830937 PLL2 Encodes a protein with similarity to the POL locus which is a novel protein phosphatase 2C. Ubiquitously expressed. No phenotype observed in homozygous null mutant background. C.G. S.X.
0.02 1e+0 34 At5g26300 832699 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PFOM C.G. S.X.
0.01 1e+0 34 At4g11420 826746 EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. C.G. S.X.
0.01 1e+0 34 At4g09140 826493 MLH1 (MUTL-HOMOLOGUE 1) Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max GmaAffx.80460.2.S1_at AW705955 - - 2e-1 At4g28740 - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare EBro02_SQ007_I24_at EBro02_SQ007_I24 - - 3e+0 Atmg01130 - C.G. S.X.
0.03 1e-1 38 Oryza sativa Os09g0127900 9637.m00238 - - 1e+0 At5g55570 unknown protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.211728.1.S1_at pmrna22982 hypothetical protein - 1e+0 At4g02090 unknown protein C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.29544.1.S1_at CA640590 - - 2e+0 At4g02090 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1619339_s_at CF215343 ripening-related protein-like - 3e+0 At2g23780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.5488.1.S1_at CF623713 hypothetical protein LOC100276754 - 1e-1 At1g64490 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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