Gene omics information

Query gene ID At4g01960
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.157.8At4g01960828190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.1912.7At5g46840834728RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBVAS.X.H.G.
0.168.8At3g50910824255unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBS.X.H.G.
0.146.8At5g35410833502SOS2 (SALT OVERLY SENSITIVE 2)encodes a member of the CBL-interacting protein kinase family, is a regulatory component controlling plant potassium nutritionS.X.H.G.
0.114.1At1g36050840509unknown proteinF:molecular_function unknown;P:fatty acid biosynthetic process;C:plasma membrane;MOFPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
39.799.8GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
32.599.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
26.299.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
25.599.7GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
23.999.6GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.363e-1479At1g02380837745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.049e-238At3g20530821599protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAC.G.S.X.
0.039e-238At1g611052745840disease resistance protein-relatedF:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMBC.G.S.X.
0.023e-136At5g24960832566CYP71A14putative cytochrome P450C.G.S.X.
0.023e-136At5g57840835894transferase family proteinencodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)C.G.S.X.
0.013e-136At4g12620826875ORC1B (ORIGIN OF REPLICATION COMPLEX 1B)Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.C.G.S.X.
0.013e-136At3g45130823649LAS1F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMAC.G.S.X.
0.013e-136At1g30470839926SIT4 phosphatase-associated family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BMOFPVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-138Glycine maxPsAffx.CL2584Contig1_atPsAffx.CL2584Contig1--1e-1At3g09890ankyrin repeat family proteinC.G.S.X.
0.033e+032Hordeum vulgarerbaal19j16_x_atrbaal19j16--1e+0At2g36100integral membrane family proteinC.G.S.X.
0.031e-242Oryza sativaOs07g0484200AK072662.1-Pollen specific actin-depolymerizing factor 11e-10At5g52360ADF10 (ACTIN DEPOLYMERIZING FACTOR 10)C.G.S.X.
0.154e-1169Populus trichocarpaPtpAffx.202393.1.S1_atpmrna4806hypothetical protein-2e-11At4g01960unknown proteinC.G.S.X.
0.049e-238Triticum aestivumTaAffx.26360.1.S1_atCA689518--3e-2At4g01960unknown proteinC.G.S.X.
0.034e-134Vitis vinifera1609869_atCA815742hypothetical protein LOC100253108-5e-6At1g51560FMN bindingC.G.S.X.
0.036e-134Zea maysZm.6719.1.A1_atAI395930--8e-1At4g01960unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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