CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01960

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.15 7.8 At4g01960 828190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.19 12.7 At5g46840 834728 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBVA S.X. H.G.
0.16 8.8 At3g50910 824255 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB S.X. H.G.
0.14 6.8 At5g35410 833502 SOS2 (SALT OVERLY SENSITIVE 2) encodes a member of the CBL-interacting protein kinase family, is a regulatory component controlling plant potassium nutrition S.X. H.G.
0.11 4.1 At1g36050 840509 unknown protein F:molecular_function unknown;P:fatty acid biosynthetic process;C:plasma membrane;MOFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.7 99.8 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
33.9 99.7 E-MEXP-285-raw-cel-440782725
32.5 99.7 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
29.6 99.7 E-ATMX-35-raw-cel-1574334864
27.1 99.7 E-MEXP-285-raw-cel-440782791
26.2 99.7 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
26.0 99.7 E-ATMX-33-raw-cel-1562596197
25.5 99.7 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
24.9 99.6 E-ATMX-35-raw-cel-1574334880
23.9 99.6 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 3e-14 79 At1g02380 837745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.04 9e-2 38 At3g20530 821599 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.03 9e-2 38 At1g61105 2745840 disease resistance protein-related F:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMB C.G. S.X.
0.02 3e-1 36 At5g24960 832566 CYP71A14 putative cytochrome P450 C.G. S.X.
0.02 3e-1 36 At5g57840 835894 transferase family protein encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091) C.G. S.X.
0.01 3e-1 36 At4g12620 826875 ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime. C.G. S.X.
0.01 3e-1 36 At3g45130 823649 LAS1 F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMA C.G. S.X.
0.01 3e-1 36 At1g30470 839926 SIT4 phosphatase-associated family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BMOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Glycine max PsAffx.CL2584Contig1_at PsAffx.CL2584Contig1 - - 1e-1 At3g09890 ankyrin repeat family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare rbaal19j16_x_at rbaal19j16 - - 1e+0 At2g36100 integral membrane family protein C.G. S.X.
0.03 1e-2 42 Oryza sativa Os07g0484200 AK072662.1 - Pollen specific actin-depolymerizing factor 1 1e-10 At5g52360 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) C.G. S.X.
0.15 4e-11 69 Populus trichocarpa PtpAffx.202393.1.S1_at pmrna4806 hypothetical protein - 2e-11 At4g01960 unknown protein C.G. S.X.
0.04 9e-2 38 Triticum aestivum TaAffx.26360.1.S1_at CA689518 - - 3e-2 At4g01960 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1609869_at CA815742 hypothetical protein LOC100253108 - 5e-6 At1g51560 FMN binding C.G. S.X.
0.03 6e-1 34 Zea mays Zm.6719.1.A1_at AI395930 - - 8e-1 At4g01960 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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