CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01720

Gene name WRKY47

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.28 30.3 At4g01720 828001 WRKY47 member of WRKY Transcription Factor; Group II-b S.X. H.G.
0.40 50.8 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.35 41.6 At1g61380 842432 SD1-29 (S-DOMAIN-1 29) F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.29 30.3 At2g39210 818506 nodulin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMA S.X. H.G.
0.18 11.4 At4g25110 828614 AtMC2 (metacaspase 2) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.3 99.9 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
87.2 99.9 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
86.8 99.9 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
77.8 99.9 GSM142840 MG001_ATH1_A1-Torres-1N1 GSE6176 Impact of Type III effectors on plant defense responses
65.4 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
58.6 99.8 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
56.0 99.8 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
53.8 99.8 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
48.2 99.8 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
44.3 99.8 GSM128674 Underwood_1-26_hrpA-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 3e-34 147 At4g04450 825775 WRKY42 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.05 9e-19 95 At4g22070 828296 WRKY31 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.08 1e-17 91 At1g68150 843143 WRKY9 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.08 2e-16 87 At1g18860 838467 WRKY61 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.10 4e-15 83 At1g62300 842527 WRKY6 transcription factor WRKY6 (WRKY6) C.G. S.X.
0.08 3e-9 63 At5g15130 831365 WRKY72 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.02 8e-7 56 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.02 1e-2 42 At2g30250 817575 WRKY25 member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. C.G. S.X.
0.01 1e-2 42 At1g55600 842009 WRKY10 (WRKY DNA-BINDING PROTEIN 10) member of WRKY Transcription Factor; Group I. It has WRKY domain at its N terminal end and zinc-finger like motif. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-9 65 Glycine max GmaAffx.83326.2.S1_at BU081884 WRKY34 protein - 2e-23 At4g22070 WRKY31 C.G. S.X.
0.03 4e-1 36 Hordeum vulgare Contig4038_s_at Contig4038 - - 8e-1 At4g01720 WRKY47 C.G. S.X.
0.11 4e-4 48 Oryza sativa Os06g0146250 9634.m00460 - - 5e-18 At5g15130 WRKY72 C.G. S.X.
0.09 3e-25 117 Populus trichocarpa PtpAffx.217349.1.S1_at pmrna32570 hypothetical protein - 2e-26 At4g04450 WRKY42 C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.5433.1.S1_a_at CA623872 - - 8e-16 At1g62300 WRKY6 C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1620383_at CD715703 - - 2e-21 At1g29860 WRKY71 C.G. S.X.
0.02 1e+0 34 Zea mays Zm.12706.3.A1_a_at AI665270 p8MTCP1 /// p8MTCP1 - 3e-1 At3g50580 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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