Gene omics information

Query gene ID At4g01680
Gene name MYB55 (myb domain protein 55)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At4g01680826853MYB55 (myb domain protein 55)Encodes a putative transcription factor (MYB55).S.X.H.G.
0.8994.6At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMS.X.H.G.
0.8994.6At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOS.X.H.G.
0.6781.6At1g27670839659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6781.6At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.S.X.H.G.
0.5773.8At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
114.399.9GSM131196AtGen_D-30_2-AS_REP2_ATH1GSE5617AtGenExpress: Light treatments
107.299.9GSM131181AtGen_D-13_1-BS_REP1_ATH1GSE5617AtGenExpress: Light treatments
79.399.9GSM131211AtGen_D-45_3-BS_REP3_ATH1GSE5617AtGenExpress: Light treatments
79.199.9GSM131182AtGen_D-14_1-AS_REP1_ATH1GSE5617AtGenExpress: Light treatments
76.299.9GSM131197AtGen_D-31_2-US_REP2_ATH1GSE5617AtGenExpress: Light treatments
74.899.9GSM131179AtGen_D-11_1-PS_REP1_ATH1GSE5617AtGenExpress: Light treatments
71.199.9GSM131214AtGen_D-48_3-WS_REP3_ATH1GSE5617AtGenExpress: Light treatments
71.099.9GSM131180AtGen_D-12_1-RS_REP1_ATH1GSE5617AtGenExpress: Light treatments
70.299.9GSM131213AtGen_D-47_3-US_REP3_ATH1GSE5617AtGenExpress: Light treatments
68.299.9GSM131210AtGen_D-44_3-RS_REP3_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.262e-65250At1g09540837480MYB61 (MYB DOMAIN PROTEIN 61)Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.C.G.S.X.
0.262e-49196At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.C.G.S.X.
0.199e-49194At5g26660832723ATMYB86 (MYB DOMAIN PROTEIN 86)a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters.C.G.S.X.
0.106e-1685At3g13890820602ATMYB26 (MYB DOMAIN PROTEIN 26)Encodes a putative transcription factor (MYB26). Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants.C.G.S.X.
0.114e-1169At5g16600831522MYB43 (myb domain protein 43)Encodes a putative transcription factor (MYB43).C.G.S.X.
0.064e-1169At1g22640838870MYB3 (MYB DOMAIN PROTEIN 3)MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expressionC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.276e-29129Glycine maxGmaAffx.28927.2.S1_atCA784132MYB transcription factor MYB160-9e-36At1g09540MYB61 (MYB DOMAIN PROTEIN 61)C.G.S.X.
0.031e+034Hordeum vulgareContig12569_atContig12569--1e+0At4g01680MYB55 (myb domain protein 55)C.G.S.X.
0.072e-1481Oryza sativaOs05g0140100AK111821.1-Myb, DNA-binding domain containing protein1e-10At1g57560AtMYB50 (myb domain protein 50)C.G.S.X.
0.267e-41169Populus trichocarpaPtpAffx.19531.1.S1_atCN550068hypothetical protein-7e-41At4g01680MYB55 (myb domain protein 55)C.G.S.X.
0.086e-756Triticum aestivumTa.3031.2.S1_atCA615676--5e-11At1g57560AtMYB50 (myb domain protein 50)C.G.S.X.
0.061e-136Vitis vinifera1619579_atAB073014.1--4e-13At1g22640MYB3 (MYB DOMAIN PROTEIN 3)C.G.S.X.
0.069e-134Zea maysZm.13910.1.S1_x_atAF099367.1R2R3MYB-domain protein-2e-1At4g01680MYB55 (myb domain protein 55)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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