CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01680

Gene name MYB55 (myb domain protein 55)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At4g01680 826853 MYB55 (myb domain protein 55) Encodes a putative transcription factor (MYB55). S.X. H.G.
0.89 94.6 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.89 94.6 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO S.X. H.G.
0.67 81.6 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. S.X. H.G.
0.57 73.8 At5g67020 836837 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
114.3 99.9 GSM131196 AtGen_D-30_2-AS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
107.2 99.9 GSM131181 AtGen_D-13_1-BS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
79.3 99.9 GSM131211 AtGen_D-45_3-BS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
79.1 99.9 GSM131182 AtGen_D-14_1-AS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
76.2 99.9 GSM131197 AtGen_D-31_2-US_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
74.8 99.9 GSM131179 AtGen_D-11_1-PS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
71.1 99.9 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
71.0 99.9 GSM131180 AtGen_D-12_1-RS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
70.2 99.9 GSM131213 AtGen_D-47_3-US_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
68.2 99.9 GSM131210 AtGen_D-44_3-RS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.26 2e-65 250 At1g09540 837480 MYB61 (MYB DOMAIN PROTEIN 61) Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size. C.G. S.X.
0.26 2e-49 196 At1g57560 842131 AtMYB50 (myb domain protein 50) Member of the R2R3 factor gene family. C.G. S.X.
0.19 9e-49 194 At5g26660 832723 ATMYB86 (MYB DOMAIN PROTEIN 86) a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters. C.G. S.X.
0.10 6e-16 85 At3g13890 820602 ATMYB26 (MYB DOMAIN PROTEIN 26) Encodes a putative transcription factor (MYB26). Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants. C.G. S.X.
0.11 4e-11 69 At5g16600 831522 MYB43 (myb domain protein 43) Encodes a putative transcription factor (MYB43). C.G. S.X.
0.06 4e-11 69 At1g22640 838870 MYB3 (MYB DOMAIN PROTEIN 3) MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 6e-29 129 Glycine max GmaAffx.28927.2.S1_at CA784132 MYB transcription factor MYB160 - 9e-36 At1g09540 MYB61 (MYB DOMAIN PROTEIN 61) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig12569_at Contig12569 - - 1e+0 At4g01680 MYB55 (myb domain protein 55) C.G. S.X.
0.07 2e-14 81 Oryza sativa Os05g0140100 AK111821.1 - Myb, DNA-binding domain containing protein 1e-10 At1g57560 AtMYB50 (myb domain protein 50) C.G. S.X.
0.26 7e-41 169 Populus trichocarpa PtpAffx.19531.1.S1_at CN550068 hypothetical protein - 7e-41 At4g01680 MYB55 (myb domain protein 55) C.G. S.X.
0.08 6e-7 56 Triticum aestivum Ta.3031.2.S1_at CA615676 - - 5e-11 At1g57560 AtMYB50 (myb domain protein 50) C.G. S.X.
0.06 1e-1 36 Vitis vinifera 1619579_at AB073014.1 - - 4e-13 At1g22640 MYB3 (MYB DOMAIN PROTEIN 3) C.G. S.X.
0.06 9e-1 34 Zea mays Zm.13910.1.S1_x_at AF099367.1 R2R3MYB-domain protein - 2e-1 At4g01680 MYB55 (myb domain protein 55) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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