CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01630

Gene name ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.67 81.6 At5g15890 831446 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFOVBA S.X. H.G.
0.33 38.1 At1g63450 842651 catalytic F:catalytic activity;P:unknown;C:membrane;POM S.X. H.G.
0.33 38.1 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.33 38.1 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
516.8 100.0 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
227.0 100.0 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
192.6 100.0 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
186.1 100.0 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
167.6 100.0 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
142.1 99.9 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
138.8 99.9 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
137.2 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
108.5 99.9 GSM184921 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
97.0 99.9 GSM266671 Arabidopsis, root cells, cortex, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 7e-15 81 At1g02320 839425 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown C.G. S.X.
0.13 3e-14 79 At1g20190 838608 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.17 1e-13 77 At2g03090 814838 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.17 4e-10 65 At2g28950 817444 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.12 4e-7 56 At2g39700 818553 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.03 6e-6 52 At5g39310 833927 ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.03 4e-4 46 At1g65680 842879 ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.10 6e-3 42 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.04 6e-3 42 At5g56320 835731 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-7 56 Glycine max Gma.13110.2.S1_at BI785748 - - 2e-14 At2g03090 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) C.G. S.X.
0.06 3e-6 52 Hordeum vulgare HVSMEl0024B06r2_at HVSMEl0024B06r2 - - 4e-6 At4g01630 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) C.G. S.X.
0.11 5e-5 50 Oryza sativa Os02g0267700 9630.m01566 - Alpha-expansin OsEXPA14 3e-5 At4g01630 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) C.G. S.X.
0.27 1e-14 81 Populus trichocarpa PtpAffx.202325.1.S1_at pmrna4655 hypothetical protein - 6e-15 At4g01630 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.4410.1.S1_at CA742632 - - 7e-1 At4g01630 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) C.G. S.X.
0.11 8e-12 69 Vitis vinifera 1610418_at BQ798078 hypothetical protein LOC100245385 - 8e-13 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) C.G. S.X.
0.07 2e-4 46 Zea mays Zm.665.1.S1_at AF332169.1 alpha expansin1 - 7e-13 At2g37640 EXP3 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009826 The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
C GO:0009828 The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.
C GO:0009831 The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage