CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01450

Gene name nodulin MtN21 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At4g01450 828176 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOM S.X. H.G.
0.40 50.8 At4g01440 826697 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BPOAM S.X. H.G.
0.29 30.3 At3g20015 821540 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO S.X. H.G.
0.24 20.7 At2g40900 818687 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BOPAM S.X. H.G.
0.11 4.1 At3g21770 821731 peroxidase 30 (PER30) (P30) (PRXR9) F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
73.9 99.9 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
57.9 99.8 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
51.1 99.8 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
38.3 99.8 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.2 99.7 GSM184506 Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.3 99.7 GSM134302 Penfield_1-4_endosperm-ABA_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
34.5 99.7 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
32.6 99.7 GSM184494 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.1 99.7 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
26.5 99.7 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 2e-9 63 At4g01440 826697 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BPOAM C.G. S.X.
0.08 9e-9 61 At1g01070 839550 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAFM C.G. S.X.
0.04 6e-7 56 At1g11450 837687 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM C.G. S.X.
0.01 2e-3 44 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV C.G. S.X.
0.02 8e-3 42 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max HgAffx.20912.1.A1_at CK350619 - - 6e-2 At1g56420 unknown protein C.G. S.X.
0.03 1e+0 34 Hordeum vulgare EBem10_SQ002_L23_s_at EBem10_SQ002_L23 - - 2e-1 At5g13070 MSF1-like family protein C.G. S.X.
0.02 3e-1 38 Oryza sativa OsAffx.18439.1.S1_s_at - - - 0 C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.209565.1.S1_at pmrna18940 cytochrome P450 - 3e-1 At4g33130 - C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.51251.1.S1_at CA728679 - - 2e+0 At4g21500 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1616417_at CB975222 hypothetical protein LOC100257171 - 2e-2 At4g21610 LOL2 (LSD ONE LIKE 2) C.G. S.X.
0.02 9e-1 34 Zea mays Zm.7457.1.A1_at BM078465 cold shock protein-1 - 1e+0 At5g40645 nitrate-responsive NOI protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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