CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01400

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.79 89.1 At4g01400 827943 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.71 84.2 At5g16300 831491 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.71 84.2 At3g17900 821058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
0.66 80.1 At2g21390 816678 coatomer protein complex, subunit alpha, putative F:protein binding, structural molecule activity, transporter activity;P:intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport;C:COPI vesicle coat, CUL4 RING ubiquitin ligase complex, membrane;MFOBPA S.X. H.G.
0.66 80.1 At3g05420 819707 ACBP4 (ACYL-COA BINDING PROTEIN 4) Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport. S.X. H.G.
0.64 78.9 At1g05520 837054 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:transport, response to salt stress;C:COPII vesicle coat;MFOP S.X. H.G.
0.63 78.1 At4g34450 829596 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPB S.X. H.G.
0.62 77.3 At5g11560 831028 catalytic F:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPA S.X. H.G.
0.60 75.7 At1g62020 842497 coatomer protein complex, subunit alpha, putative F:protein binding, structural molecule activity, transporter activity;P:intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport;C:COPI vesicle coat, plasma membrane, CUL4 RING ubiquitin ligase complex, membrane;MFOBPA S.X. H.G.
0.59 74.7 At5g51430 835217 EYE (EMBRYO YELLOW) Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.6 99.7 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
19.4 99.6 GSM142905 WW002_ATH1_A1-willa-CON-REP3 GSE6181 Assembly of the cell wall pectic matrix.
19.2 99.6 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
18.8 99.5 GSM133947 Murray_2-3_T4-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
17.7 99.5 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
16.3 99.5 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
14.5 99.4 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
14.2 99.4 GSM142907 WW002_ATH1_A2-willa-ISOX-REP3 GSE6181 Assembly of the cell wall pectic matrix.
13.7 99.4 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
10.8 99.2 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-1 38 At3g49740 824136 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:unknown;POFMB C.G. S.X.
0.01 2e+0 36 At5g23570 832422 SGS3 (SUPPRESSOR OF GENE SILENCING 3) Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway. C.G. S.X.
0.01 2e+0 36 At4g28980 829019 cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1) Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription. C.G. S.X.
0.01 2e+0 36 At4g25520 828657 SLK1 (SEUSS-LIKE 1) F:transcription regulator activity;P:unknown;C:unknown;OMFPBV C.G. S.X.
0.01 2e+0 36 At4g25515 828656 SLK3 (SEUSS-LIKE 3) F:transcription regulator activity;P:unknown;C:unknown;OMFPBV C.G. S.X.
0.02 2e+0 36 At4g35750 829728 Rho-GTPase-activating protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.01 2e+0 36 At3g17450 821009 hAT dimerisation domain-containing protein F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFB C.G. S.X.
0.01 2e+0 36 At3g61500 825323 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 8e-25 117 Glycine max Gma.1626.1.S1_a_at BU543989 - - 2e-25 At4g01400 - C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig21003_at Contig21003 - - 6e+0 At5g17280 unknown protein C.G. S.X.
0.04 1e-5 54 Oryza sativa Os02g0456000 AK119496.1 - - 4e-6 At4g01400 - C.G. S.X.
0.22 2e-34 149 Populus trichocarpa PtpAffx.202305.1.S1_at pmrna4611 hypothetical protein - 8e-35 At4g01400 - C.G. S.X.
0.04 7e+0 34 Triticum aestivum Ta.8497.1.S1_at BJ278600 - - 2e+0 At4g01400 - C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1611505_at CF405131 - - 8e-1 At3g61990 O-methyltransferase family 3 protein C.G. S.X.
0.01 7e-1 36 Zea mays Zm.2539.1.S1_at AY109957.1 - - 1e+0 At4g35390 AGF1 (AT-hook protein of GA feedback 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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