CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01340

Gene name CHP-rich zinc finger protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g01340 828062 CHP-rich zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.41 52.4 At1g62170 842513 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAF S.X. H.G.
0.31 33.8 At1g43810 840978 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At3g13140 820502 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:cellular_component unknown;PFMBO S.X. H.G.
0.28 30.3 At4g04230 3770148 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.27 26.2 At4g15060 827169 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBF S.X. H.G.
0.27 26.2 At5g45230 834559 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
0.26 24.4 At1g22720 838878 wall-associated kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOFVB S.X. H.G.
0.26 24.4 At1g44980 841063 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.26 24.4 At4g28130 828928 diacylglycerol kinase accessory domain-containing protein F:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:chloroplast;MPOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
829.0 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
509.7 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
473.8 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
386.4 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
378.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
145.4 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
123.8 99.9 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
123.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
122.7 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
118.3 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 4e-53 208 At4g01350 828015 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:response to chitin;C:unknown;POMF C.G. S.X.
0.22 9e-48 190 At5g59920 836114 ULI3 Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses. C.G. S.X.
0.10 2e-12 73 At5g59940 836116 DC1 domain-containing protein / UV-B light-insensitive protein, putative F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFB C.G. S.X.
0.12 9e-8 57 At2g02955 814824 MEE12 (maternal effect embryo arrest 12) F:unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PMF C.G. S.X.
0.06 2e-5 50 At5g59930 836115 DC1 domain-containing protein / UV-B light-insensitive protein, putative F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMF C.G. S.X.
0.01 1e+0 34 At5g44770 834506 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO C.G. S.X.
0.01 1e+0 34 At2g45000 819108 EMB2766 (EMBRYO DEFECTIVE 2766) F:structural constituent of nuclear pore;P:biological_process unknown;C:chloroplast, nuclear pore;MOBFPVA C.G. S.X.
0.01 1e+0 34 At2g15420 816034 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max GmaAffx.45531.1.S1_at BG789974 - - 4e-6 At5g15630 IRX6 C.G. S.X.
0.03 1e+1 30 Hordeum vulgare Contig1129_at Contig1129 - - 8e-8 At3g09480 histone H2B, putative C.G. S.X.
0.01 3e+0 34 Oryza sativa Os01g0789100 AK069910.1 - CDP-alcohol phosphatidyltransferase family protein 3e-3 At4g04870 CLS (CARDIOLIPIN SYNTHASE) C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.223025.1.S1_s_at pmrna40809 hypothetical protein - 3e-1 At4g01340 CHP-rich zinc finger protein-related C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.8888.1.S1_at CA618546 - - 3e-1 At4g01340 CHP-rich zinc finger protein-related C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1607685_at CB343164 - - 2e-1 At4g01340 CHP-rich zinc finger protein-related C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.944.1.S1_at AI820414 - - 2e-10 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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