CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01330

Gene name ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.10 3.4 At4g01330 828117 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.67 81.6 At3g15450 820784 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PBOMF S.X. H.G.
0.67 81.6 At5g19120 832032 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF S.X. H.G.
0.57 73.8 At5g22920 832356 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBA S.X. H.G.
0.40 50.8 At2g25900 817131 ATCTH putative Cys3His zinc finger protein (ATCTH) mRNA, complete S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.3 99.7 GSM67112 Arabidopsis_Seedling04 GSE3056 Arabidopsis Pollination Study
22.4 99.6 GSM253163 24h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
20.6 99.6 GSM253158 4h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
20.5 99.6 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
19.2 99.6 GSM133402 Knight_2-4_sfr6-dk_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
18.1 99.5 GSM253160 6h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
17.6 99.5 GSM133400 Knight_2-3_sfr6-lt_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
16.4 99.5 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
16.4 99.5 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.9 99.5 GSM253161 8h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 1e-128 460 At1g01540 839533 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.14 1e-13 77 At4g02630 828217 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.11 3e-8 59 At4g34500 829601 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 5e-7 56 At2g42960 818898 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.10 8e-6 52 At3g17420 821006 GPK1 serine/threonine protein kinase-like protein C.G. S.X.
0.01 3e-2 40 At1g53430 841778 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.02 1e-1 38 At5g24080 832473 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-2 40 Glycine max GmaAffx.57573.1.S1_at AW201125 - - 1e-9 At2g42960 protein kinase family protein C.G. S.X.
0.08 3e-4 46 Hordeum vulgare Contig10196_at Contig10196 - - 2e-50 At3g59110 protein kinase family protein C.G. S.X.
0.26 3e-19 97 Oryza sativa Os03g0125600 CB636799 - Ser Thr specific protein kinase-like protein 7e-29 At1g01540 protein kinase family protein C.G. S.X.
0.21 5e-17 89 Populus trichocarpa PtpAffx.221191.1.S1_at pmrna37880 hypothetical protein - 2e-41 At4g02630 protein kinase family protein C.G. S.X.
0.10 1e-7 57 Triticum aestivum Ta.4345.1.A1_at CA605720 - - 6e-20 At2g42960 protein kinase family protein C.G. S.X.
0.02 1e-1 36 Vitis vinifera 1616666_at CF403684 hypothetical protein LOC100249984 - 2e-8 At2g30160 mitochondrial substrate carrier family protein C.G. S.X.
0.06 3e-3 42 Zea mays Zm.5412.1.A1_at CF635537 hypothetical protein LOC100280167 - 3e-6 At4g02630 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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