Gene omics information

Query gene ID At4g01310
Gene name ribosomal protein L5 family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g01310827947ribosomal protein L5 family proteinF:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFMS.X.H.G.
0.9496.7At1g07320837243RPL4encodes a plastid ribosomal protein L4S.X.H.G.
0.9296.0At3g52150824379RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBAS.X.H.G.
0.9095.1At1g78630844199emb1473 (embryo defective 1473)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAPS.X.H.G.
0.8994.6At2g3345081791050S ribosomal protein L28, chloroplast (CL28)F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPFS.X.H.G.
0.8693.1At1g74970843836RPS9 (RIBOSOMAL PROTEIN S9)ribosomal protein S9, nuclear encoded component of the chloroplast ribosomeS.X.H.G.
0.8592.4At1g79850844324RPS17 (RIBOSOMAL PROTEIN S17)nuclear-encoded 30S chloroplast ribosomal protein S17S.X.H.G.
0.8592.4At3g1312082050030S ribosomal protein S10, chloroplast, putativeF:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPFS.X.H.G.
0.8592.4At3g15190820750chloroplast 30S ribosomal protein S20, putativeF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPMS.X.H.G.
0.8491.9At1g64510842759ribosomal protein S6 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-136At1g13740837934AFP2 (ABI FIVE BINDING PROTEIN 2)Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.C.G.S.X.
0.032e+034At4g10810826677unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
0.012e+034At2g02170814748remorin family proteinF:DNA binding;P:biological_process unknown;C:plasma membrane;OBMPFAVC.G.S.X.
0.012e+034At1g48820841304terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POC.G.S.X.
0.022e+034At1g70280843364NHL repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPAVC.G.S.X.
0.016e+032At5g46580834701pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.016e+032At5g13520831196peptidase M1 family proteinF:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAPC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.323e-24113Glycine maxGma.18021.1.S1_atCD402537--3e-24At4g01310ribosomal protein L5 family proteinC.G.S.X.
0.033e+032Hordeum vulgareContig7147_atContig7147--1e-8At4g32060calcium-binding EF hand family proteinC.G.S.X.
0.043e-344Oryza sativaOs03g0125000AK070779.1--2e-3At4g01310ribosomal protein L5 family proteinC.G.S.X.
0.423e-21103Populus trichocarpaPtpAffx.18790.1.S1_atCV278410hypothetical protein-2e-19At4g01310ribosomal protein L5 family proteinC.G.S.X.
0.034e-136Triticum aestivumTaAffx.5400.1.S1_atCA712170--2e+1At4g35655-C.G.S.X.
0.286e-25113Vitis vinifera1621285_atCB347466hypothetical protein LOC100251632-3e-24At4g01310ribosomal protein L5 family proteinC.G.S.X.
0.023e+032Zea maysZm.9169.1.A1_atBQ538269hypothetical protein LOC100273080-4e-1At2g47970NPL4 family proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
CGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

03010Link to KEGG PATHWAYRibosome
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