CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01310

Gene name ribosomal protein L5 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g01310 827947 ribosomal protein L5 family protein F:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFM S.X. H.G.
0.94 96.7 At1g07320 837243 RPL4 encodes a plastid ribosomal protein L4 S.X. H.G.
0.92 96.0 At3g52150 824379 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBA S.X. H.G.
0.90 95.1 At1g78630 844199 emb1473 (embryo defective 1473) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP S.X. H.G.
0.89 94.6 At2g33450 817910 50S ribosomal protein L28, chloroplast (CL28) F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPF S.X. H.G.
0.86 93.1 At1g74970 843836 RPS9 (RIBOSOMAL PROTEIN S9) ribosomal protein S9, nuclear encoded component of the chloroplast ribosome S.X. H.G.
0.85 92.4 At1g79850 844324 RPS17 (RIBOSOMAL PROTEIN S17) nuclear-encoded 30S chloroplast ribosomal protein S17 S.X. H.G.
0.85 92.4 At3g13120 820500 30S ribosomal protein S10, chloroplast, putative F:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPF S.X. H.G.
0.85 92.4 At3g15190 820750 chloroplast 30S ribosomal protein S20, putative F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPM S.X. H.G.
0.84 91.9 At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.0 99.2 E-MEXP-637-raw-cel-913039258
8.7 99.0 E-MEXP-637-raw-cel-913039056
8.4 99.0 E-MEXP-637-raw-cel-913039081
8.2 99.0 E-MEXP-635-raw-cel-912819888
7.6 98.9 E-MEXP-635-raw-cel-912819856
7.5 98.8 E-MEXP-637-raw-cel-913039230
7.4 98.8 E-MEXP-637-raw-cel-913039032
6.9 98.7 E-MEXP-637-raw-cel-913038998
6.8 98.7 E-MEXP-637-raw-cel-913039113
5.5 98.3 E-MEXP-635-raw-cel-912819872
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At1g13740 837934 AFP2 (ABI FIVE BINDING PROTEIN 2) Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent. C.G. S.X.
0.03 2e+0 34 At4g10810 826677 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 2e+0 34 At2g02170 814748 remorin family protein F:DNA binding;P:biological_process unknown;C:plasma membrane;OBMPFAV C.G. S.X.
0.01 2e+0 34 At1g48820 841304 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO C.G. S.X.
0.02 2e+0 34 At1g70280 843364 NHL repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPAV C.G. S.X.
0.01 6e+0 32 At5g46580 834701 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.01 6e+0 32 At5g13520 831196 peptidase M1 family protein F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 3e-24 113 Glycine max Gma.18021.1.S1_at CD402537 - - 3e-24 At4g01310 ribosomal protein L5 family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig7147_at Contig7147 - - 1e-8 At4g32060 calcium-binding EF hand family protein C.G. S.X.
0.04 3e-3 44 Oryza sativa Os03g0125000 AK070779.1 - - 2e-3 At4g01310 ribosomal protein L5 family protein C.G. S.X.
0.42 3e-21 103 Populus trichocarpa PtpAffx.18790.1.S1_at CV278410 hypothetical protein - 2e-19 At4g01310 ribosomal protein L5 family protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.5400.1.S1_at CA712170 - - 2e+1 At4g35655 - C.G. S.X.
0.28 6e-25 113 Vitis vinifera 1621285_at CB347466 hypothetical protein LOC100251632 - 3e-24 At4g01310 ribosomal protein L5 family protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9169.1.A1_at BQ538269 hypothetical protein LOC100273080 - 4e-1 At2g47970 NPL4 family protein C.G. S.X.
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Biological processes

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ECC GO ID Process Name
C GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03010 Ribosome
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