Gene omics information

Query gene ID At4g01290
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At4g01290828103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPS.X.H.G.
0.8994.6At5g22760832339PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFOS.X.H.G.
0.6075.7At1g54490841891XRN4 (EXORIBONUCLEASE 4)Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.S.X.H.G.
0.5469.5At5g61140836235DEAD box RNA helicase, putativeEncodes a predicted protein with 30% identity with MER3/RCK.S.X.H.G.
0.5368.6At2g46560819268transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOPS.X.H.G.
0.5267.4At1g76850844020SEC5A (EXOCYST COMPLEX COMPONENT SEC5)F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVBS.X.H.G.
0.4862.5At1g02080839244transcriptional regulator-relatedF:transcription regulator activity;P:unknown;C:membrane;MOFBPS.X.H.G.
0.4862.5At3g06670819852bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.4659.8At2g25760817118protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAS.X.H.G.
0.4659.8At3g22170821781FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
31.199.7GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.599.7GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
25.899.7GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
20.199.6GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
19.899.6GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
18.899.5GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.899.5GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
14.399.4GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
14.299.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
14.199.4GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-140At2g045408149963-oxoacyl-(acyl-carrier-protein) synthase II, putativeF:transferase activity, transferring acyl groups other than amino-acyl groups, fatty-acid synthase activity, catalytic activity;P:biosynthetic process, fatty acid biosynthetic process, metabolic process;C:mitochondrion;BOFMPAC.G.S.X.
0.014e-138At5g12030831076AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.C.G.S.X.
0.012e+036At5g44520834479ribose 5-phosphate isomerase-relatedF:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:chloroplast;BOAPMFC.G.S.X.
0.012e+036At5g58280835940transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PC.G.S.X.
0.012e+036At3g21700821724SGP2Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.C.G.S.X.
0.012e+036At1g76770844011heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.029e-344Glycine maxGmaAffx.51885.1.S1_atBU927365--3e+0At5g27247unknown proteinC.G.S.X.
0.017e-136Hordeum vulgareHA22E11r_s_atHA22E11r--3e+0At3g44755unknown proteinC.G.S.X.
0.012e-140Oryza sativaOs02g07104019630.m04683--5e-1At3g44290anac060 (Arabidopsis NAC domain containing protein 60)C.G.S.X.
0.024e-552Populus trichocarpaPtpAffx.69476.1.A1_atCV255951hypothetical protein-6e-1At4g08485-C.G.S.X.
0.016e+034Triticum aestivumTaAffx.6480.1.S1_atCA685192--2e-1At1g15610unknown proteinC.G.S.X.
0.014e-136Vitis vinifera1611369_atCA809038hypothetical protein LOC100253653-6e-30At1g14410WHY1 (WHIRLY 1)C.G.S.X.
0.012e-138Zea maysZm.12841.1.A1_atCA400132--9e-13At5g61330rRNA processing protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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