CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01250

Gene name WRKY22

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At4g01250 827896 WRKY22 member of WRKY Transcription Factor; Group II-e S.X. H.G.
0.60 75.7 At1g16130 838182 WAKL2 (wall associated kinase-like 2) wall-associated kinase like S.X. H.G.
0.50 65.3 At5g01540 831722 LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. S.X. H.G.
0.50 65.3 At5g61560 836277 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVA S.X. H.G.
0.42 53.9 At2g27660 817312 DC1 domain-containing protein F:zinc ion binding;P:unknown;C:chloroplast;BPMOFVA S.X. H.G.
0.27 26.2 At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
128.2 99.9 E-MEXP-807-raw-cel-1173272948
125.5 99.9 E-MEXP-807-raw-cel-1173273223
102.9 99.9 E-MEXP-807-raw-cel-1173273170
96.5 99.9 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
92.3 99.9 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
91.0 99.9 E-MEXP-547-raw-cel-863346421
81.8 99.9 E-NASC-76-raw-cel-1359878951
81.2 99.9 E-NASC-76-raw-cel-1359879106
80.8 99.9 E-MEXP-807-raw-cel-1173273116
77.7 99.9 E-MEXP-807-raw-cel-1173273060
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 1e-16 87 At2g34830 818048 WRKY35 (WRKY DNA-binding protein 35) member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.08 3e-11 69 At3g58710 825040 WRKY69 member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.12 2e-9 63 At5g52830 835360 WRKY27 Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. C.G. S.X.
0.08 1e-7 57 At4g23550 828455 WRKY29 Encodes WRKY DNA-binding protein 29 (WRKY29). C.G. S.X.
0.02 5e-4 46 At5g45050 834536 TTR1 Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. C.G. S.X.
0.04 2e-3 44 At2g41230 818722 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM C.G. S.X.
0.04 3e-2 40 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 6e-4 46 Glycine max GmaAffx.85931.1.S1_at AW596933 transcription factor - 4e-4 At4g01250 WRKY22 C.G. S.X.
0.03 3e+0 32 Hordeum vulgare EBem06_SQ004_E07_s_at EBem06_SQ004_E07 - - 3e+0 At4g15140 unknown protein C.G. S.X.
0.08 6e-2 40 Oryza sativa OsAffx.15184.1.S1_at - - - 0 C.G. S.X.
0.10 7e-7 56 Populus trichocarpa PtpAffx.218725.1.S1_x_at pmrna34447 hypothetical protein - 6e-10 At1g30650 WRKY14 C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.69207.1.S1_at CA645162 - - 2e-3 At2g34830 WRKY35 (WRKY DNA-binding protein 35) C.G. S.X.
0.05 4e-5 48 Vitis vinifera 1611650_at CA808599 hypothetical protein LOC100244122 - 3e-26 At2g23320 WRKY15 C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.989.1.A1_at AI834717 - - 3e+0 At4g35783 RTFL6 (ROTUNDIFOLIA LIKE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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