CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01080

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.36 43.6 At2g20340 816553 tyrosine decarboxylase, putative F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAV S.X. H.G.
0.04 0.9 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM S.X. H.G.
0.03 0.6 At5g24150 832480 SQP1 squalene monooxygenase gene homolog S.X. H.G.
0.00 0.0 At5g52320 835308 CYP96A4 member of CYP96A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.0 99.9 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
89.2 99.9 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
83.4 99.9 GSM133825 Walters_A-04-Kruger-WH1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
74.8 99.9 E-MEXP-546-raw-cel-863289641
72.6 99.9 E-MEXP-449-raw-cel-676423253
65.0 99.8 GSM142805 SS001_ATH1_A8-Smith-11 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
48.6 99.8 GSM133823 Walters_A-02-Kruger-WL2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
47.1 99.8 GSM260878 A1-Greco-Bou GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
44.9 99.8 GSM133824 Walters_A-03-Kruger-WL3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
43.8 99.8 E-MEXP-739-raw-cel-1099467357
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 7e-41 169 At1g01430 837247 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.06 4e-8 59 At4g11090 826710 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.07 2e-4 48 At4g23790 828479 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PF C.G. S.X.
0.01 4e-2 40 At3g22150 821779 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:chloroplast;POMFBA C.G. S.X.
0.02 4e-2 40 At1g70230 843359 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e-1 38 At3g27700 822392 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA C.G. S.X.
0.01 2e-1 38 At3g07400 819928 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMB C.G. S.X.
0.01 2e-1 38 At2g24210 816955 TPS10 (terpene synthase 10) F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-9 63 Glycine max GmaAffx.26271.1.S1_at BE329941 - - 8e-11 At1g01430 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig4100_s_at Contig4100 - - 5e-28 At1g48900 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) C.G. S.X.
0.02 5e-3 44 Oryza sativa OsAffx.14658.1.S1_at - - - 0 C.G. S.X.
0.08 4e-6 54 Populus trichocarpa PtpAffx.55513.1.S1_at CX185736 hypothetical protein - 2e-6 At4g01080 unknown protein C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.37225.1.S1_at BJ292007 - - 1e+0 At5g16010 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1618023_at CF214261 hypothetical protein LOC100266064 - 3e-4 At1g18520 TET11 (TETRASPANIN11) C.G. S.X.
0.03 1e+0 34 Zea mays Zm.4056.1.A1_at CA403994 hypothetical protein LOC100192464 - 3e+0 At4g01080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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