CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g01026

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g01026 827923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM S.X. H.G.
0.37 45.0 At1g58200 842187 MSL3 (MscS-LIKE 3) A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity. S.X. H.G.
0.34 39.8 At5g20900 832214 JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.29 30.3 At1g73030 843634 VPS46.2 F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFO S.X. H.G.
0.26 24.4 At1g55000 841942 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB S.X. H.G.
0.22 17.5 At1g17280 838300 UBC34 (ubiquitin-conjugating enzyme 34) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV S.X. H.G.
0.20 14.4 At3g55830 824749 EPC1 (ECTOPICALLY PARTING CELLS) A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant. S.X. H.G.
0.19 12.7 At1g10500 837590 ATCPISCA (chloroplast-localized IscA-like protein) Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. S.X. H.G.
0.19 12.7 At3g19900 821528 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF S.X. H.G.
0.19 12.7 At2g38000 818378 chaperone protein dnaJ-related F:unknown;P:unknown;C:cellular_component unknown;BOMPAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
99.7 99.9 GSM152143 siz1-3 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
99.0 99.9 GSM152145 siz1-3 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
70.2 99.9 GSM152141 siz1-3 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
67.7 99.9 GSM152137 Col-0 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
61.7 99.8 GSM152135 Col-0 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
53.4 99.8 E-MEXP-1443-raw-cel-1581869745
43.2 99.8 E-MEXP-1443-raw-cel-1581869803
40.5 99.8 GSM77180 04h low CO2 + dark replicate B GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
37.8 99.8 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
36.7 99.7 GSM152139 Col-0 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 4e-96 351 At1g01360 838452 unknown protein F:unknown;P:unknown;C:cellular_component unknown;PB C.G. S.X.
0.26 9e-8 57 At5g53160 835397 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.15 5e-6 52 At4g27920 828905 unknown protein F:unknown;P:unknown;C:cellular_component unknown;PBO C.G. S.X.
0.01 8e-2 38 At2g25560 817094 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV C.G. S.X.
0.02 3e-1 36 At4g13640 826998 UNE16 (unfertilized embryo sac 16) F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:unknown;POBM C.G. S.X.
0.02 3e-1 36 At1g76040 843936 CPK29 member of Calcium Dependent Protein Kinase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 7e-3 42 Glycine max GmaAffx.921.1.S1_at BU545697 - - 2e-25 At5g53160 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HA03A11u_at HA03A11u - - 6e-18 At1g07790 HTB1 C.G. S.X.
0.11 4e-2 40 Oryza sativa Os.21043.1.S1_at - - - 0 C.G. S.X.
0.27 1e-16 87 Populus trichocarpa Ptp.4847.2.S1_s_at CV261474 hypothetical protein - 1e-19 At1g01360 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.109881.2.S1_at CA661619 - - 7e-2 At1g01360 unknown protein C.G. S.X.
0.25 7e-12 69 Vitis vinifera 1619343_at CB349349 hypothetical protein LOC100251890 - 4e-27 At5g53160 unknown protein C.G. S.X.
0.03 8e+0 30 Zea mays Zm.4943.1.A1_at BG320867 hypothetical protein LOC100272864 - 1e-1 At4g27920 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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