CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g00970

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.58 73.8 At4g00970 827936 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.56 73.0 At5g67450 836881 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor. S.X. H.G.
0.53 68.6 At5g52760 835353 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At3g57460 824913 catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;MBFPO S.X. H.G.
0.48 62.5 At2g21910 816727 CYP96A5 member of CYP96A S.X. H.G.
0.48 62.5 At2g40740 818669 WRKY55 member of WRKY Transcription Factor; Group III S.X. H.G.
0.48 62.5 At2g27320 817275 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB S.X. H.G.
0.46 59.8 At5g05300 830412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.46 59.8 At5g27420 832801 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFV S.X. H.G.
0.45 58.3 At5g01560 830345 LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3) Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
302.0 100.0 E-MEXP-807-raw-cel-1173273252
151.3 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
148.2 99.9 E-MEXP-807-raw-cel-1173273116
142.2 99.9 E-MEXP-807-raw-cel-1173273170
138.3 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
113.7 99.9 E-MEXP-807-raw-cel-1173273060
112.0 99.9 E-MEXP-807-raw-cel-1173273144
111.9 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
111.5 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
82.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.59 0 884 At4g00960 827937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.20 5e-12 73 At4g21410 827893 protein kinase family protein F:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVA C.G. S.X.
0.20 7e-11 69 At4g21400 827892 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 1e-9 65 At4g04510 825781 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 4e-9 63 At4g04570 825789 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.06 4e-9 63 At4g38830 830038 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 2e-8 61 At4g23160 828415 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVA C.G. S.X.
0.06 3e-7 57 At4g04490 825779 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-3 46 Glycine max GmaAffx.8939.1.S1_at BU549481 - - 4e-4 At4g00970 protein kinase family protein C.G. S.X.
0.05 2e-3 44 Hordeum vulgare Contig25306_at Contig25306 - - 1e-3 At4g00970 protein kinase family protein C.G. S.X.
0.05 3e-2 42 Oryza sativa OsAffx.719.1.S1_x_at - - - 0 C.G. S.X.
0.04 1e-3 46 Populus trichocarpa PtpAffx.224551.1.S1_at pmrna43186 hypothetical protein - 4e-6 At4g04490 protein kinase family protein C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.56854.1.S1_at CA642532 - - 7e-2 At4g27290 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding C.G. S.X.
0.03 3e-1 36 Vitis vinifera 1613324_at CB971883 hypothetical protein LOC100246997 - 4e-54 At1g53440 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.02 4e-1 36 Zea mays Zm.16280.1.A1_at CO527119 receptor-like kinase - 4e-13 At4g21390 B120 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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