CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g00910

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At4g00910 827985 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOF S.X. H.G.
0.36 43.6 At1g74770 843816 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB S.X. H.G.
0.25 22.6 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. S.X. H.G.
0.18 11.4 At4g10510 826643 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM S.X. H.G.
0.02 0.4 At4g28410 828958 aminotransferase-related F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
350.4 100.0 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
243.7 100.0 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
172.6 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
150.9 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
148.9 99.9 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
141.4 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
135.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
132.9 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.7 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.7 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 8e-4 46 At2g27240 817266 unknown protein F:unknown;P:biological_process unknown;C:unknown;PBOF C.G. S.X.
0.01 7e-1 36 At5g54440 835532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.02 7e-1 36 At4g27690 828883 VPS26B (VACUOLAR PROTEIN SORTING 26B) F:molecular_function unknown;P:intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi;C:retromer complex;MOFP C.G. S.X.
0.01 7e-1 36 At3g13790 820591 ATBFRUCT1 Encodes a protein with invertase activity. C.G. S.X.
0.01 7e-1 36 At1g77330 844069 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor) C.G. S.X.
0.01 3e+0 34 At5g42620 834269 metalloendopeptidase/ zinc ion binding F:metalloendopeptidase activity, zinc ion binding;P:proteolysis, cell adhesion;C:endomembrane system, membrane;MOPFBVA C.G. S.X.
0.01 3e+0 34 At5g48360 834889 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA C.G. S.X.
0.01 3e+0 34 At4g16060 827291 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max Gma.12733.1.A1_at CD395922 - - 8e-1 At1g31835 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig15503_at Contig15503 - - 1e+0 At3g04770 RPSAb (40S ribosomal protein SA B) C.G. S.X.
0.02 4e-1 38 Oryza sativa Os02g0673100 AK108963.1 - Protein of unknown function UPF0005 family protein 2e-3 At2g27240 unknown protein C.G. S.X.
0.05 1e-3 46 Populus trichocarpa PtpAffx.201741.1.S1_at pmrna3459 hypothetical protein - 6e-4 At4g00910 unknown protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.19119.1.S1_at CA647453 - - 3e-1 At5g67390 unknown protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1613113_at CK136925.1 phenylalanine ammonia-lyase - 1e+0 At1g57850 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.01 5e+0 32 Zea mays Zm.9757.1.A1_at BM338070 - - 5e-3 At1g73150 GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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