CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g00820

Gene name iqd17 (IQ-domain 17)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At4g00820 828002 iqd17 (IQ-domain 17) F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVB S.X. H.G.
0.57 73.8 At1g67590 843080 remorin family protein F:DNA binding;P:biological_process unknown;C:nucleus;OPBMFVA S.X. H.G.
0.40 50.8 At1g17140 838284 tropomyosin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.22 17.5 At1g15910 838161 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.14 6.8 At3g15560 - - - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
235.6 100.0 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
165.6 100.0 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
161.3 99.9 GSM311287 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
146.5 99.9 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
141.3 99.9 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
128.2 99.9 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
108.3 99.9 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
108.2 99.9 GSM311273 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
108.0 99.9 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
86.5 99.9 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 2e-50 200 At1g01110 839394 IQD18 (IQ-domain 18) F:molecular_function unknown;P:unknown;C:mitochondrion;OPMFBV C.G. S.X.
0.04 1e-15 85 At4g14750 827130 IQD19 (IQ-domain 19) F:calmodulin binding;P:unknown;C:unknown;PMOFBVA C.G. S.X.
0.05 2e-10 67 At1g51960 841624 IQD27 (IQ-domain 27) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.06 9e-10 65 At4g10640 826656 IQD16 (IQ-domain 16) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.04 5e-8 59 At2g26180 817158 IQD6 (IQ-domain 6) F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.02 5e-5 50 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.04 2e-4 48 At3g16490 820897 IQD26 (IQ-domain 26) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFOM C.G. S.X.
0.03 3e-3 44 At1g17480 838321 IQD7 (IQ-domain 7) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max PsAffx.psHB006xE02f_s_at PsAffx.psHB006xE02f - - 1e+0 At2g18328 ATRL4 (ARABIDOPSIS RAD-LIKE 4) C.G. S.X.
0.04 1e-1 38 Hordeum vulgare Contig9202_at Contig9202 - - 2e-1 At4g00820 iqd17 (IQ-domain 17) C.G. S.X.
0.02 1e-1 40 Oryza sativa Os.9500.1.S1_s_at - - - 0 C.G. S.X.
0.07 5e-6 54 Populus trichocarpa PtpAffx.99807.1.S1_at DN488544 hypothetical protein - 2e-6 At4g00820 iqd17 (IQ-domain 17) C.G. S.X.
0.05 8e-1 36 Triticum aestivum Ta.19433.1.A1_at CA651672 - - 3e-1 At4g00820 iqd17 (IQ-domain 17) C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1608021_at BQ796920 hypothetical protein LOC100250690 - 6e-1 At3g46620 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e-1 36 Zea mays Zm.18954.1.A1_at CO533875 hypothetical protein LOC100273399 - 2e+0 At1g68960 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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