Gene omics information

Query gene ID At4g00670
Gene name DNA binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At4g00670828034DNA bindingF:DNA binding;P:unknown;C:unknown;POFMS.X.H.G.
0.6680.1At4g18340827561glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOS.X.H.G.
0.6277.3At4g03500827731ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOFPBVAS.X.H.G.
0.5974.7At1g68430843172unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.5873.8At1g75720843906unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.5673.0At5g40980834100unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PS.X.H.G.
0.5368.6At5g58690835983phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPS.X.H.G.
0.5267.4At5g50120835077transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAS.X.H.G.
0.5166.3At3g20570821604plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMVS.X.H.G.
0.5065.3At1g14730838038-F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
480.5100.0GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
215.3100.0GSM226554Slice12JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
150.599.9GSM226538L8SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
144.099.9GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
140.899.9GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
125.999.9GSM184533Protoplasted root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
123.399.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
114.699.9GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
101.399.9GSM260883Yap_A2-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
98.299.9GSM184517Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-134At4g32160829348phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction;C:unknown;MOBFPAVC.G.S.X.
0.017e-134At4g10070826598KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVAC.G.S.X.
0.037e-134At3g24490822039transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBVC.G.S.X.
0.037e-134At1g65040842812protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MPOFVC.G.S.X.
0.047e-134At1g54760841917AGL85 (AGAMOUS-LIKE 85)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PC.G.S.X.
0.017e-134At1g34220840321unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.056e-238Glycine maxGma.3757.2.S1_a_atAI941326--8e-35At3g46460UBC13 (ubiquitin-conjugating enzyme 13)C.G.S.X.
0.045e+030Hordeum vulgareHF09N12r_atHF09N12r--1e-1At5g39330unknown proteinC.G.S.X.
0.041e+034Oryza sativaOs12g06026009640.m04007--8e-1At4g00670DNA bindingC.G.S.X.
0.041e+034Populus trichocarpaPtpAffx.56251.1.A1_atCV272200--8e-1At4g00670DNA bindingC.G.S.X.
0.057e-134Triticum aestivumTaAffx.56460.1.S1_atCA651304--7e-1At4g00670DNA bindingC.G.S.X.
0.042e-134Vitis vinifera1612261_atCF568811--1e-12At3g55010PUR5C.G.S.X.
0.045e+030Zea maysZm.19199.1.A1_atAW267377--4e+0At5g16030unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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