CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g00670

Gene name DNA binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM S.X. H.G.
0.66 80.1 At4g18340 827561 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO S.X. H.G.
0.62 77.3 At4g03500 827731 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOFPBVA S.X. H.G.
0.59 74.7 At1g68430 843172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.58 73.8 At1g75720 843906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.56 73.0 At5g40980 834100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.53 68.6 At5g58690 835983 phosphoinositide-specific phospholipase C family protein F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP S.X. H.G.
0.52 67.4 At5g50120 835077 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA S.X. H.G.
0.51 66.3 At3g20570 821604 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV S.X. H.G.
0.50 65.3 At1g14730 838038 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
480.5 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
215.3 100.0 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
150.5 99.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
144.0 99.9 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
140.8 99.9 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
125.9 99.9 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
123.3 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
114.6 99.9 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
101.3 99.9 GSM260883 Yap_A2-AMF_Rep2 GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
98.2 99.9 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-1 34 At4g32160 829348 phox (PX) domain-containing protein F:phosphoinositide binding;P:signal transduction;C:unknown;MOBFPAV C.G. S.X.
0.01 7e-1 34 At4g10070 826598 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA C.G. S.X.
0.03 7e-1 34 At3g24490 822039 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBV C.G. S.X.
0.03 7e-1 34 At1g65040 842812 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MPOFV C.G. S.X.
0.04 7e-1 34 At1g54760 841917 AGL85 (AGAMOUS-LIKE 85) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P C.G. S.X.
0.01 7e-1 34 At1g34220 840321 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-2 38 Glycine max Gma.3757.2.S1_a_at AI941326 - - 8e-35 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HF09N12r_at HF09N12r - - 1e-1 At5g39330 unknown protein C.G. S.X.
0.04 1e+0 34 Oryza sativa Os12g0602600 9640.m04007 - - 8e-1 At4g00670 DNA binding C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.56251.1.A1_at CV272200 - - 8e-1 At4g00670 DNA binding C.G. S.X.
0.05 7e-1 34 Triticum aestivum TaAffx.56460.1.S1_at CA651304 - - 7e-1 At4g00670 DNA binding C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1612261_at CF568811 - - 1e-12 At3g55010 PUR5 C.G. S.X.
0.04 5e+0 30 Zea mays Zm.19199.1.A1_at AW267377 - - 4e+0 At5g16030 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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