Gene omics information

Query gene ID At4g00420
Gene name double-stranded RNA-binding domain (DsRBD)-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At4g00420828061double-stranded RNA-binding domain (DsRBD)-containing proteinF:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular, chloroplast;PS.X.H.G.
0.8693.1At1g02680837962TAF13 (TBP-ASSOCIATED FACTOR 13)F:RNA polymerase II transcription factor activity, DNA binding;P:transcription initiation, transcription from RNA polymerase II promoter;C:transcription factor complex;FMPOVS.X.H.G.
0.6781.6At1g73350843670unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POMFS.X.H.G.
0.6075.7At5g44450834472methyltransferaseF:methyltransferase activity;P:biological_process unknown;C:chloroplast;MFOPBS.X.H.G.
0.5773.8At3g08910820040DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
87.399.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
84.999.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
77.799.9E-MEXP-509-raw-cel-829148561
73.699.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
72.699.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
71.699.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.699.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
70.499.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
67.899.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.799.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.072e-550At1g80650844404RTL1 (RNase three-like protein 1)F:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular;POC.G.S.X.
0.031e-344At5g60340836156maoC-like dehydratase domain-containing proteinF:oxidoreductase activity, ATP binding;P:metabolic process;C:mitochondrion;BOMFAPC.G.S.X.
0.013e-136At5g14620831315DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.C.G.S.X.
0.011e+034At4g25800828685calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PBOC.G.S.X.
0.031e+034At3g57480824915zinc finger (C2H2 type, AN1-like) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFOPC.G.S.X.
0.011e+034At2g38070818385-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.8248.1.S1_atBI426579--9e-1At4g00420double-stranded RNA-binding domain (DsRBD)-containing proteinC.G.S.X.
0.032e+032Hordeum vulgareHVSMEk0011A09f_x_atHVSMEk0011A09f--8e-1At1g52320unknown proteinC.G.S.X.
0.032e+034Oryza sativaOs04g0615200AK063824.1-Conserved hypothetical protein2e+0At1g23360UbiE/COQ5 methyltransferase family proteinC.G.S.X.
0.044e-136Populus trichocarpaPtpAffx.214797.1.S1_s_atpmrna28647hypothetical protein-3e-34At5g13650elongation factor family proteinC.G.S.X.
0.035e+032Triticum aestivumTaAffx.85738.1.S1_atCA620072--2e-1At5g44610MAP18 (Microtubule-associated Protein 18)C.G.S.X.
0.033e-134Vitis vinifera1615477_atCF212673hypothetical protein LOC100244108-9e-2At2g36295unknown proteinC.G.S.X.
0.032e+032Zea maysZmAffx.99.1.A1_atAI665482leucine carboxyl methyltransferase 1-3e+0At4g39300unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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