Gene omics information

Query gene ID At4g00231
Gene name MEE50 (maternal effect embryo arrest 50)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4152.4At4g00231826583MEE50 (maternal effect embryo arrest 50)F:binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFPOS.X.H.G.
0.3133.8At1g05590837064HEXO2 (BETA-HEXOSAMINIDASE 2)Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.S.X.H.G.
0.2624.4At5g41330834135potassium channel tetramerisation domain-containing proteinF:protein binding, voltage-gated potassium channel activity;P:potassium ion transport;C:voltage-gated potassium channel complex, membrane;MPOS.X.H.G.
0.1912.7At5g48840834942PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC)Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate.S.X.H.G.
0.1811.4At1g80550844394pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POMFBAS.X.H.G.
0.168.8At1g73400843675pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMABS.X.H.G.
0.157.8At5g64360836557DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BMPOFAS.X.H.G.
0.157.8At4g35140829666transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:unknown;MBFOPAS.X.H.G.
0.146.8At5g49430835003transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAVS.X.H.G.
0.082.3At5g65560836682pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
149.299.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
112.299.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
110.399.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
101.699.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
94.899.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
84.999.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-240At4g04720825807CPK21member of Calcium Dependent Protein KinaseC.G.S.X.
0.014e-240At4g21940828283CPK15member of Calcium Dependent Protein KinaseC.G.S.X.
0.012e-138At3g53440824512DNA bindingF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVC.G.S.X.
0.012e-138At3g20410821586CPK9 (calmodulin-domain protein kinase 9)calmodulin-domain protein kinase CDPK isoform 9 (CPK9)C.G.S.X.
0.012e-138At2g15260816015zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;POFMBC.G.S.X.
0.012e-138At1g80270844367DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMFC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.113e-448Glycine maxGmaAffx.64110.1.S1_atBI785364--7e-5At4g00231MEE50 (maternal effect embryo arrest 50)C.G.S.X.
0.021e+034Hordeum vulgareHB24E05r_s_atHB24E05r--4e-2At5g52200unknown proteinC.G.S.X.
0.024e-138Oryza sativaOs02g0602300AK065609.1-Conserved hypothetical protein2e-1At2g01780S-locus glycoprotein, putativeC.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.24010.1.S1_a_atCV279050hypothetical protein-7e-3At2g23670YCF37 (Arabidopsis homolog of Synechocystis YCF37)C.G.S.X.
0.022e-138Triticum aestivumTaAffx.59282.1.S1_x_atCA604647--2e+0At1g08390nucleic acid bindingC.G.S.X.
0.028e-134Vitis vinifera1620038_atBQ796012--2e+0At4g09800RPS18C (S18 RIBOSOMAL PROTEIN)C.G.S.X.
0.021e+034Zea maysZm.4664.2.A1_atAI737871--5e-3At2g26640KCS11 (3-KETOACYL-COA SYNTHASE 11)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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