CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g00231

Gene name MEE50 (maternal effect embryo arrest 50)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.41 52.4 At4g00231 826583 MEE50 (maternal effect embryo arrest 50) F:binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFPO S.X. H.G.
0.31 33.8 At1g05590 837064 HEXO2 (BETA-HEXOSAMINIDASE 2) Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3. S.X. H.G.
0.26 24.4 At5g41330 834135 potassium channel tetramerisation domain-containing protein F:protein binding, voltage-gated potassium channel activity;P:potassium ion transport;C:voltage-gated potassium channel complex, membrane;MPO S.X. H.G.
0.19 12.7 At5g48840 834942 PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate. S.X. H.G.
0.18 11.4 At1g80550 844394 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMFBA S.X. H.G.
0.16 8.8 At1g73400 843675 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMAB S.X. H.G.
0.15 7.8 At5g64360 836557 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BMPOFA S.X. H.G.
0.15 7.8 At4g35140 829666 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:unknown;MBFOPA S.X. H.G.
0.14 6.8 At5g49430 835003 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV S.X. H.G.
0.08 2.3 At5g65560 836682 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
149.2 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
118.1 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
112.2 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
110.3 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
104.1 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
101.6 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
97.5 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
94.8 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
94.1 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.9 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At4g04720 825807 CPK21 member of Calcium Dependent Protein Kinase C.G. S.X.
0.01 4e-2 40 At4g21940 828283 CPK15 member of Calcium Dependent Protein Kinase C.G. S.X.
0.01 2e-1 38 At3g53440 824512 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV C.G. S.X.
0.01 2e-1 38 At3g20410 821586 CPK9 (calmodulin-domain protein kinase 9) calmodulin-domain protein kinase CDPK isoform 9 (CPK9) C.G. S.X.
0.01 2e-1 38 At2g15260 816015 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;POFMB C.G. S.X.
0.01 2e-1 38 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-4 48 Glycine max GmaAffx.64110.1.S1_at BI785364 - - 7e-5 At4g00231 MEE50 (maternal effect embryo arrest 50) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HB24E05r_s_at HB24E05r - - 4e-2 At5g52200 unknown protein C.G. S.X.
0.02 4e-1 38 Oryza sativa Os02g0602300 AK065609.1 - Conserved hypothetical protein 2e-1 At2g01780 S-locus glycoprotein, putative C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.24010.1.S1_a_at CV279050 hypothetical protein - 7e-3 At2g23670 YCF37 (Arabidopsis homolog of Synechocystis YCF37) C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.59282.1.S1_x_at CA604647 - - 2e+0 At1g08390 nucleic acid binding C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1620038_at BQ796012 - - 2e+0 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.4664.2.A1_at AI737871 - - 5e-3 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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