Gene omics information

Query gene ID At3g63520
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7486.1At3g63520825527CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.S.X.H.G.
0.6478.9At2g03390814868uvrB/uvrC motif-containing proteinF:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;OBMFPS.X.H.G.
0.6378.1At5g42390834245metalloendopeptidaseF:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:mitochondrion, chloroplast stroma, chloroplast;BOMFPAVS.X.H.G.
0.6277.3At4g14210827061PDS3 (PHYTOENE DESATURASE 3)Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.S.X.H.G.
0.6176.7At3g10970820268haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPAMFS.X.H.G.
0.6176.7At5g50920835165CLPC1Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.S.X.H.G.
0.5974.7At1g49970841420CLPR1Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).S.X.H.G.
0.5673.0At5g03900831927-F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BPOS.X.H.G.
0.5570.6At1g67840843110CSK (CHLOROPLAST SENSOR KINASE)Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.S.X.H.G.
0.5469.5At5g03910830269ATATH12member of ATH subfamilyS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.199.4GSM38670DSNPGSE2268Arabidopsis polysome microarray
10.499.2GSM131103Broadley_1-1_A1-Bo+P-nutrient-replete_Rep1_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
10.199.2GSM38668NSNPGSE2268Arabidopsis polysome microarray
9.699.1GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
9.099.1GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
8.699.0GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
8.399.0GSM131587ATGE_34_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
7.898.9GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-242At1g304752745766-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPBOC.G.S.X.
0.035e-240At2g45920819200U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAVC.G.S.X.
0.012e-138At2g41960818796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.028e-136At4g03520825653ATHM2chloroplast localized thioredoxin, similar to prokaryotic types.C.G.S.X.
0.018e-136At3g51950824358zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOC.G.S.X.
0.018e-136At3g28030822427UVH3 (ULTRAVIOLET HYPERSENSITIVE 3)Required for repair of pyrimidine-pyrimidinone (6-4) dimers.C.G.S.X.
0.018e-136At2g33410817905heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAC.G.S.X.
0.023e+034At5g55010835592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.415e-83309Glycine maxGma.17715.1.S1_atBI970432--5e-95At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)C.G.S.X.
0.145e-1375Hordeum vulgarerbaak32b03_s_atrbaak32b03--4e-13At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)C.G.S.X.
0.266e-28127Oryza sativaOs.10598.1.S1_at---0C.G.S.X.
0.431e-46188Populus trichocarpaPtpAffx.200858.1.S1_x_atpmrna1674hypothetical protein-4e-31At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)C.G.S.X.
0.383e-1687Triticum aestivumTa.26946.1.S1_atCD491394--2e-16At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)C.G.S.X.
0.444e-145513Vitis vinifera1610743_s_atBQ7969449,10[9',10']carotenoid cleavage dioxygenase-2e-147At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)C.G.S.X.
0.392e-1583Zea maysZm.742.1.A1_atCF920015carotenoid cleavage dioxygenase-5e-15At3g63520CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0016121The chemical reactions and pathways resulting in the breakdown of carotenes, hydrocarbon carotenoids.
XGO:0016124The chemical reactions and pathways resulting in the breakdown of xanthophylls, oxygen-containing carotenoids.
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
XGO:0016118The chemical reactions and pathways resulting in the breakdown of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00063Link to KaPPA-View 4Carotenoid and abscisic acid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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