Gene omics information

Query gene ID At3g63470
Gene name scpl40 (serine carboxypeptidase-like 40)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At3g63470825522scpl40 (serine carboxypeptidase-like 40)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBS.X.H.G.
0.8089.8At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.7586.9At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.S.X.H.G.
0.6781.6At5g15150831367ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.S.X.H.G.
0.5570.6At3g50640824227unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
131.399.9GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
126.499.9GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
114.299.9GSM266665Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
107.399.9GSM184835Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5GSE7639Expression analysis of root developmental zones after treatment with salt
102.799.9GSM265428Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
99.699.9GSM184836Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6GSE7639Expression analysis of root developmental zones after treatment with salt
88.599.9GSM266671Arabidopsis, root cells, cortex, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
73.199.9GSM266662Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
70.799.9GSM184891Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
63.299.8GSM226546Slice4JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.254e-24113At3g56540824821serine carboxypeptidase, putativeF:serine-type carboxypeptidase activity;P:proteolysis;C:unknown;PMFOBC.G.S.X.
0.161e-20101At3g52020824365scpl39 (serine carboxypeptidase-like 39)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBC.G.S.X.
0.161e-1481At3g52000824363scpl36 (serine carboxypeptidase-like 36)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOC.G.S.X.
0.135e-859At3g52010824364scpl37 (serine carboxypeptidase-like 37)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBC.G.S.X.
0.118e-756At2g05850815137scpl38 (serine carboxypeptidase-like 38)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBC.G.S.X.
0.023e-344At4g15640827241unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PC.G.S.X.
0.033e-344At4g30610829184BRS1 (BRI1 SUPPRESSOR 1)Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.C.G.S.X.
0.021e-242At3g02110821207scpl25 (serine carboxypeptidase-like 25)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBC.G.S.X.
0.025e-240At2g25900817131ATCTHputative Cys3His zinc finger protein (ATCTH) mRNA, completeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-552Glycine maxGmaAffx.69562.1.S1_atBQ610957--3e-13At5g23210SCPL34C.G.S.X.
0.092e-1273Hordeum vulgareContig4555_atContig4555--4e-12At3g63470scpl40 (serine carboxypeptidase-like 40)C.G.S.X.
0.111e-1069Oryza sativaOs.6035.1.S1_at---0C.G.S.X.
0.132e-242Populus trichocarpaPtpAffx.200840.1.S1_atpmrna1635hypothetical protein-1e-2At3g63470scpl40 (serine carboxypeptidase-like 40)C.G.S.X.
0.071e-552Triticum aestivumTaAffx.8178.1.S1_atCA632999--5e-15At2g35780scpl26 (serine carboxypeptidase-like 26)C.G.S.X.
0.032e-136Vitis vinifera1618751_atCF513682hypothetical protein LOC100255006-1e-4At1g28110SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)C.G.S.X.
0.043e-136Zea maysZm.17220.1.S1_s_atCK347223serine carboxypeptidase 1-6e-1At3g63470scpl40 (serine carboxypeptidase-like 40)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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