CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62680

Gene name PRP3 (PROLINE-RICH PROTEIN 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein S.X. H.G.
0.99 98.1 At4g26010 828707 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.97 97.6 At4g25790 828684 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVA S.X. H.G.
0.97 97.6 At4g40090 830172 AGP3 (arabinogalactan-protein 3) F:unknown;P:multicellular organismal development;C:endomembrane system;P S.X. H.G.
0.96 97.3 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.95 97.0 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. S.X. H.G.
0.95 97.0 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
0.95 97.0 At3g49960 824158 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.94 96.7 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA S.X. H.G.
0.94 96.7 At5g05500 830433 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
107.7 99.9 E-MEXP-722-raw-cel-1062243559
93.4 99.9 E-MEXP-722-raw-cel-1062243470
83.9 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
80.2 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
68.8 99.9 E-MEXP-722-raw-cel-1062242948
66.4 99.8 E-MEXP-722-raw-cel-1062243516
66.0 99.8 E-MEXP-722-raw-cel-1062243429
62.6 99.8 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
61.0 99.8 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
54.0 99.8 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 1e-78 293 At1g54970 841938 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. C.G. S.X.
0.02 1e-1 38 At5g61750 836297 cupin family protein F:manganese ion binding, nutrient reservoir activity;P:response to salt stress;C:endomembrane system, apoplast;PFOB C.G. S.X.
0.02 1e-1 38 At2g43150 818917 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBFOVA C.G. S.X.
0.02 5e-1 36 At1g16500 838220 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFV C.G. S.X.
0.02 5e-1 36 At1g29570 839834 zinc finger protein-related F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.03 5e-1 36 At1g21310 838728 ATEXT3 (EXTENSIN 3) Encodes extensin 3. C.G. S.X.
0.01 2e+0 34 At5g08550 830755 ILP1 (increased level of polyploidy1-1D) Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression. C.G. S.X.
0.01 2e+0 34 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF C.G. S.X.
0.01 2e+0 34 At5g16910 831554 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) encodes a gene similar to cellulose synthase. Located in golgi membranes. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max PsAffx.psZO007iF05r_at PsAffx.psZO007iF05r - - 4e+0 At2g25780 unknown protein C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig6470_at Contig6470 - - 1e-3 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.16682.1.S1_at - - - 0 C.G. S.X.
0.03 1e-2 42 Populus trichocarpa PtpAffx.224324.1.S1_x_at pmrna42773 hypothetical protein - 8e-5 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.80002.1.S1_at CA704464 - - 6e-2 At4g13530 unknown protein C.G. S.X.
0.03 4e-2 38 Vitis vinifera 1619733_at CB342943 hypothetical protein LOC100243866 - 1e-7 At2g15020 unknown protein C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.871.1.A1_at AI770769 - - 8e-1 At1g69760 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0010054 The process whereby a relatively unspecialized cell acquires the specialized features of a trichoblast, a root epidermal cell that will give rise to a root hair.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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