CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62660

Gene name GATL7 (Galacturonosyltransferase-like 7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.52 67.4 At3g62660 825440 GATL7 (Galacturonosyltransferase-like 7) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.68 82.2 At1g05960 837106 binding F:binding;P:biological_process unknown;C:plasma membrane;MFPBO S.X. H.G.
0.67 81.6 At5g47620 834812 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA S.X. H.G.
0.65 79.6 At1g10740 837617 unknown protein F:unknown;P:glycerol biosynthetic process;C:endomembrane system;BOPFM S.X. H.G.
0.65 79.6 At5g58950 836012 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA S.X. H.G.
0.64 78.9 At1g54920 841930 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFB S.X. H.G.
0.62 77.3 At2g19880 816507 ceramide glucosyltransferase, putative F:ceramide glucosyltransferase activity;P:biological_process unknown;C:endomembrane system;MBPFAO S.X. H.G.
0.62 77.3 At3g12620 820442 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBV S.X. H.G.
0.60 75.7 At1g22200 838825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFP S.X. H.G.
0.59 74.7 At4g20380 827786 zinc finger protein (LSD1) LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
85.6 99.9 E-MEXP-285-raw-cel-440782791
81.2 99.9 E-MEXP-285-raw-cel-440782725
78.1 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
73.8 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
68.5 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
66.7 99.8 E-MEXP-1138-raw-cel-1432773322
60.2 99.8 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
55.3 99.8 E-MEXP-1138-raw-cel-1432773258
53.9 99.8 E-MEXP-1138-raw-cel-1432772522
48.9 99.8 E-MEXP-1138-raw-cel-1432772938
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 2e-16 87 At1g02720 839475 GATL5 (GALACTURONOSYLTRANSFERASE 5) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.50 3e-15 83 At4g02130 827438 GATL6 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.13 9e-9 61 At1g24170 839030 LGT9 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.15 9e-9 61 At1g70090 843345 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.16 6e-7 56 At1g13250 837885 GATL3 (Galacturonosyltransferase-like 3) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 4e-18 93 Glycine max Gma.16749.1.S1_at CD407063 - - 3e-18 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.04 1e+0 34 Hordeum vulgare Contig13544_at Contig13544 - - 5e-2 At1g19300 PARVUS (PARVUS) C.G. S.X.
0.15 5e-9 63 Oryza sativa Os03g0300900 AK119594.1 - Glycosyl transferase, family 8 protein 5e-9 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.37 2e-10 67 Populus trichocarpa PtpAffx.25163.1.A1_at BP932897 hypothetical protein - 2e-10 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.06 2e-6 54 Triticum aestivum TaAffx.12563.1.A1_at BJ254471 - - 1e-3 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1615986_at CF214784 hypothetical protein LOC100265777 - 1e+0 At1g13250 GATL3 (Galacturonosyltransferase-like 3) C.G. S.X.
0.02 9e-1 34 Zea mays Zm.10730.1.A1_at AY106276.1 hypothetical protein LOC100276831 - 5e+0 At5g19315 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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