Gene omics information

Query gene ID At3g62630
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g62630825437-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBAS.X.H.G.
0.4963.5At3g15095820740unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPVAS.X.H.G.
0.4558.3At2g22670816798IAA8IAA8 (IAA8) gene is auxin inducible.S.X.H.G.
0.4457.2At1g14820838047SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:cellular_component unknown;PFMOS.X.H.G.
0.4253.9At5g55230835616ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1)Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to the spindle appears to be regulated by a phosphorylation sensitive switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution.S.X.H.G.
0.4152.4At1g70370843373BURP domain-containing protein / polygalacturonase, putativeF:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAVS.X.H.G.
0.3745.0At4g38430830000ROPGEF1Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.S.X.H.G.
0.3745.0At5g14210831271leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;PMOBFVAS.X.H.G.
0.3541.6At4g13640826998UNE16 (unfertilized embryo sac 16)F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:unknown;POBMS.X.H.G.
0.3439.8At4g09640826550-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
85.599.9GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.099.7GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
32.599.7GSM10477lec1-1 24-Hr Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
26.899.7GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
22.399.6GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
20.899.6GSM242956Steroid day 1 (day1D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
19.399.6GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
17.599.5GSM242954Mock day 1 (day1E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
16.899.5GSM10478lec1-1 24-Hr Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
15.099.4GSM10442WT Ovule 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-344At1g44900841056ATP binding / DNA binding / DNA-dependent ATPaseF:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAVC.G.S.X.
0.029e-342At1g54200841860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBC.G.S.X.
0.024e-240At5g56950835797NAP1Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.C.G.S.X.
0.024e-240At4g20810827829transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family proteinF:RNA polymerase II transcription factor activity, transcription initiation factor activity;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIIE complex;MFPOBVAC.G.S.X.
0.014e-240At1g07850837300transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFOC.G.S.X.
0.024e-240At1g50040841428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBVC.G.S.X.
0.021e-138At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBC.G.S.X.
0.021e-138At4g01140828157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-138Glycine maxGmaAffx.67021.2.S1_atBG507361--6e-2At3g62630-C.G.S.X.
0.034e-342Hordeum vulgareContig26236_atContig26236--1e-6At1g76820GTP binding / GTPaseC.G.S.X.
0.021e-346Oryza sativaOs.46288.1.A1_x_at---0C.G.S.X.
0.052e-138Populus trichocarpaPtpAffx.210862.1.S1_atpmrna21332hypothetical protein-2e-1At3g62630-C.G.S.X.
0.036e-136Triticum aestivumTaAffx.25493.1.S1_atCA699243--3e-2At5g01881unknown proteinC.G.S.X.
0.022e-136Vitis vinifera1611563_atCF213078--2e-4At5g40980unknown proteinC.G.S.X.
0.024e+032Zea maysZm.9386.1.A1_atBQ539064hypothetical protein LOC100275351-2e-2At3g49430SRp34a (Ser/Arg-rich protein 34a)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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