CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62630

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g62630 825437 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA S.X. H.G.
0.49 63.5 At3g15095 820740 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPVA S.X. H.G.
0.45 58.3 At2g22670 816798 IAA8 IAA8 (IAA8) gene is auxin inducible. S.X. H.G.
0.44 57.2 At1g14820 838047 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:cellular_component unknown;PFMO S.X. H.G.
0.42 53.9 At5g55230 835616 ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1) Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to the spindle appears to be regulated by a phosphorylation sensitive switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution. S.X. H.G.
0.41 52.4 At1g70370 843373 BURP domain-containing protein / polygalacturonase, putative F:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAV S.X. H.G.
0.37 45.0 At4g38430 830000 ROPGEF1 Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity. S.X. H.G.
0.37 45.0 At5g14210 831271 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;PMOBFVA S.X. H.G.
0.35 41.6 At4g13640 826998 UNE16 (unfertilized embryo sac 16) F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:unknown;POBM S.X. H.G.
0.34 39.8 At4g09640 826550 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
85.5 99.9 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.0 99.7 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
32.5 99.7 GSM10477 lec1-1 24-Hr Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
26.8 99.7 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
22.3 99.6 GSM242958 Mock day 3 (day3E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
20.8 99.6 GSM242956 Steroid day 1 (day1D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
19.3 99.6 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
17.5 99.5 GSM242954 Mock day 1 (day1E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
16.8 99.5 GSM10478 lec1-1 24-Hr Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
15.0 99.4 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-3 44 At1g44900 841056 ATP binding / DNA binding / DNA-dependent ATPase F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV C.G. S.X.
0.02 9e-3 42 At1g54200 841860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB C.G. S.X.
0.02 4e-2 40 At5g56950 835797 NAP1 Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes. C.G. S.X.
0.02 4e-2 40 At4g20810 827829 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein F:RNA polymerase II transcription factor activity, transcription initiation factor activity;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIIE complex;MFPOBVA C.G. S.X.
0.01 4e-2 40 At1g07850 837300 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFO C.G. S.X.
0.02 4e-2 40 At1g50040 841428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBV C.G. S.X.
0.02 1e-1 38 At5g67020 836837 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB C.G. S.X.
0.02 1e-1 38 At4g01140 828157 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 38 Glycine max GmaAffx.67021.2.S1_at BG507361 - - 6e-2 At3g62630 - C.G. S.X.
0.03 4e-3 42 Hordeum vulgare Contig26236_at Contig26236 - - 1e-6 At1g76820 GTP binding / GTPase C.G. S.X.
0.02 1e-3 46 Oryza sativa Os.46288.1.A1_x_at - - - 0 C.G. S.X.
0.05 2e-1 38 Populus trichocarpa PtpAffx.210862.1.S1_at pmrna21332 hypothetical protein - 2e-1 At3g62630 - C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.25493.1.S1_at CA699243 - - 3e-2 At5g01881 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1611563_at CF213078 - - 2e-4 At5g40980 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.9386.1.A1_at BQ539064 hypothetical protein LOC100275351 - 2e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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