CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62600

Gene name ATERDJ3B

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At3g62600 825434 ATERDJ3B J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. S.X. H.G.
0.75 86.9 At5g03160 831917 ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. S.X. H.G.
0.67 81.6 At4g16660 827367 heat shock protein 70, putative / HSP70, putative F:ATP binding;P:unknown;C:plasma membrane, chloroplast;OBMFPAV S.X. H.G.
0.50 65.3 At4g29520 829073 - F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA S.X. H.G.
0.42 53.9 At5g28540 832950 BIP1 Encodes the luminal binding protein BiP, an ER-localized member of the HSP70 family. BiP is composed of an N-terminal ATP binding domain and a C-terminal domain that binds to hydrophobic patches on improperly/incompletely folded proteins in an ATP-dependent manner. S.X. H.G.
0.40 50.8 At1g04980 839355 ATPDIL2-2 (PDI-LIKE 2-2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
87.3 99.9 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
75.5 99.9 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
41.1 99.8 GSM284388 Arabidopsis GMPE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
36.9 99.7 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
30.3 99.7 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
27.3 99.7 GSM244454 Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
24.0 99.6 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
22.0 99.6 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
21.8 99.6 GSM244447 Arabidopsis wild-type_2-4 h_ Xanthomonas inoculated_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
21.7 99.6 GSM131140 AtGen_B-26_2-5-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-3 42 At2g35680 818137 dual specificity protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV C.G. S.X.
0.01 1e-1 38 At5g61140 836235 DEAD box RNA helicase, putative Encodes a predicted protein with 30% identity with MER3/RCK. C.G. S.X.
0.01 5e-1 36 At4g02750 828187 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:mitochondrion;POMFB C.G. S.X.
0.03 5e-1 36 At4g14615 827111 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 5e-1 36 At3g52750 824441 FTSZ2-2 Nuclear gene that encodes a plastidial division protein (FtsZ2-2). C.G. S.X.
0.02 5e-1 36 At3g18650 821396 agl103 (AGAMOUS-LIKE 103) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;POMFB C.G. S.X.
0.01 5e-1 36 At2g31220 817679 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO C.G. S.X.
0.01 5e-1 36 At2g41060 818705 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 7e-35 149 Glycine max Gma.2546.1.S1_at CA783454 - - 6e-35 At3g62600 ATERDJ3B C.G. S.X.
0.24 1e-12 73 Hordeum vulgare Contig7280_at Contig7280 - - 3e-12 At3g62600 ATERDJ3B C.G. S.X.
0.17 3e-10 67 Oryza sativa Os05g0156500 AK062718.1 - Apobec-1 binding protein 2 2e-10 At3g62600 ATERDJ3B C.G. S.X.
0.27 3e-34 147 Populus trichocarpa PtpAffx.80014.1.S1_at CV264509 hypothetical protein - 1e-24 At3g62600 ATERDJ3B C.G. S.X.
0.18 2e-12 73 Triticum aestivum Ta.8128.1.S1_x_at BQ161382 - - 4e-12 At3g62600 ATERDJ3B C.G. S.X.
0.31 3e-24 111 Vitis vinifera 1620520_s_at BQ797142 hypothetical protein LOC100252105 - 2e-23 At3g62600 ATERDJ3B C.G. S.X.
0.21 2e-14 79 Zea mays Zm.5074.1.A1_at AI600716 - - 5e-14 At3g62600 ATERDJ3B C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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