CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62590

Gene name lipase class 3 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g62590 825433 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFMB S.X. H.G.
0.67 81.6 At4g22920 828391 NYE1 (NON-YELLOWING 1) Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. S.X. H.G.
0.57 73.8 At1g79900 844329 BAC2 encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol S.X. H.G.
0.44 57.2 At1g21410 838740 SKP2A AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. S.X. H.G.
0.40 50.8 At4g32250 829358 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA S.X. H.G.
0.33 38.1 At1g72770 843609 HAB1 (HOMOLOGY TO ABI1) mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.5 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
55.8 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
47.2 99.8 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
45.5 99.8 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
43.5 99.8 GSM133731 Buchanan-Wollaston_A-3-bwoll-C0S_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
37.0 99.7 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
35.4 99.7 GSM131538 ATGE_25_B GSE5630 AtGenExpress: Developmental series (leaves)
35.1 99.7 E-MEXP-475-raw-cel-680982521
32.0 99.7 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
28.7 99.7 GSM131603 ATGE_41_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 3e-10 67 At1g02660 839544 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV C.G. S.X.
0.04 7e-8 59 At3g61680 825341 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBM C.G. S.X.
0.01 3e-4 48 At4g01037 6240517 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;MOFBPVA C.G. S.X.
0.01 2e-2 42 At5g53000 835379 TAP46 (2A phosphatase associated protein of 46 kD) PP2A-associated protein with a possible function in the chilling response C.G. S.X.
0.01 2e-2 42 At4g37250 829879 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 2e-2 42 At3g28030 822427 UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) Required for repair of pyrimidine-pyrimidinone (6-4) dimers. C.G. S.X.
0.01 6e-2 40 At5g19320 832052 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase. C.G. S.X.
0.02 6e-2 40 At5g17350 831601 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-6 56 Glycine max GmaAffx.53860.1.S1_at BE805733 - - 2e-7 At3g62590 lipase class 3 family protein C.G. S.X.
0.02 1e-1 38 Hordeum vulgare EBro01_SQ001_M06_at EBro01_SQ001_M06 - - 8e-1 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e-2 42 Oryza sativa OsAffx.26970.1.S1_at - - - 0 C.G. S.X.
0.11 6e-12 73 Populus trichocarpa PtpAffx.105119.1.S1_at BI138189 hypothetical protein - 8e-13 At3g62590 lipase class 3 family protein C.G. S.X.
0.02 7e-2 40 Triticum aestivum TaAffx.113137.1.S1_at CA618265 - - 5e-15 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) C.G. S.X.
0.02 5e-3 42 Vitis vinifera 1615078_at CA818550 hypothetical protein LOC100261569 - 3e-5 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) C.G. S.X.
0.02 3e-2 40 Zea mays Zm.3153.3.S1_a_at CF624577 B12D protein - 1e-3 At1g20440 COR47 (COLD-REGULATED 47) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage