Gene omics information

Query gene ID At3g62590
Gene name lipase class 3 family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At3g62590825433lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFMBS.X.H.G.
0.6781.6At4g22920828391NYE1 (NON-YELLOWING 1)Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.S.X.H.G.
0.5773.8At1g79900844329BAC2encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosolS.X.H.G.
0.4457.2At1g21410838740SKP2AAtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.S.X.H.G.
0.4050.8At4g32250829358protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVAS.X.H.G.
0.3338.1At1g72770843609HAB1 (HOMOLOGY TO ABI1)mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2CS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
60.599.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
55.899.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
47.299.8GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)
45.599.8GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
43.599.8GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
37.099.7GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)
35.499.7GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)
35.199.7E-MEXP-475-raw-cel-680982521
32.099.7GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
28.799.7GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.103e-1067At1g02660839544lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBVC.G.S.X.
0.047e-859At3g61680825341lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMC.G.S.X.
0.013e-448At4g010376240517ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;MOFBPVAC.G.S.X.
0.012e-242At5g53000835379TAP46 (2A phosphatase associated protein of 46 kD)PP2A-associated protein with a possible function in the chilling responseC.G.S.X.
0.012e-242At4g37250829879leucine-rich repeat family protein / protein kinase family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.012e-242At3g28030822427UVH3 (ULTRAVIOLET HYPERSENSITIVE 3)Required for repair of pyrimidine-pyrimidinone (6-4) dimers.C.G.S.X.
0.016e-240At5g19320832052RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2)Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.C.G.S.X.
0.026e-240At5g17350831601unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.132e-656Glycine maxGmaAffx.53860.1.S1_atBE805733--2e-7At3g62590lipase class 3 family proteinC.G.S.X.
0.021e-138Hordeum vulgareEBro01_SQ001_M06_atEBro01_SQ001_M06--8e-1At5g20885zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.023e-242Oryza sativaOsAffx.26970.1.S1_at---0C.G.S.X.
0.116e-1273Populus trichocarpaPtpAffx.105119.1.S1_atBI138189hypothetical protein-8e-13At3g62590lipase class 3 family proteinC.G.S.X.
0.027e-240Triticum aestivumTaAffx.113137.1.S1_atCA618265--5e-15At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)C.G.S.X.
0.025e-342Vitis vinifera1615078_atCA818550hypothetical protein LOC100261569-3e-5At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)C.G.S.X.
0.023e-240Zea maysZm.3153.3.S1_a_atCF624577B12D protein-1e-3At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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