Gene omics information

Query gene ID At3g62590
Gene name lipase class 3 family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At3g62590825433lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFMBS.X.H.G.
0.6781.6At4g22920828391NYE1 (NON-YELLOWING 1)Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.S.X.H.G.
0.5773.8At1g79900844329BAC2encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosolS.X.H.G.
0.4457.2At1g21410838740SKP2AAtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.S.X.H.G.
0.4050.8At4g32250829358protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVAS.X.H.G.
0.3338.1At1g72770843609HAB1 (HOMOLOGY TO ABI1)mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2CS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
60.599.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
55.899.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
47.299.8GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)
45.599.8GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
43.599.8GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
37.099.7GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)
35.499.7GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)
32.099.7GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
28.799.7GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.103e-1067At1g02660839544lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBVC.G.S.X.
0.047e-859At3g61680825341lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMC.G.S.X.
0.013e-448At4g010376240517ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;MOFBPVAC.G.S.X.
0.012e-242At5g53000835379TAP46 (2A phosphatase associated protein of 46 kD)PP2A-associated protein with a possible function in the chilling responseC.G.S.X.
0.012e-242At4g37250829879leucine-rich repeat family protein / protein kinase family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.012e-242At3g28030822427UVH3 (ULTRAVIOLET HYPERSENSITIVE 3)Required for repair of pyrimidine-pyrimidinone (6-4) dimers.C.G.S.X.
0.016e-240At5g19320832052RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2)Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.C.G.S.X.
0.026e-240At5g17350831601unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.132e-656Glycine maxGmaAffx.53860.1.S1_atBE805733--2e-7At3g62590lipase class 3 family proteinC.G.S.X.
0.021e-138Hordeum vulgareEBro01_SQ001_M06_atEBro01_SQ001_M06--8e-1At5g20885zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.023e-242Oryza sativaOsAffx.26970.1.S1_at---0C.G.S.X.
0.116e-1273Populus trichocarpaPtpAffx.105119.1.S1_atBI138189hypothetical protein-8e-13At3g62590lipase class 3 family proteinC.G.S.X.
0.027e-240Triticum aestivumTaAffx.113137.1.S1_atCA618265--5e-15At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)C.G.S.X.
0.025e-342Vitis vinifera1615078_atCA818550hypothetical protein LOC100261569-3e-5At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)C.G.S.X.
0.023e-240Zea maysZm.3153.3.S1_a_atCF624577B12D protein-1e-3At1g20440COR47 (COLD-REGULATED 47)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage