Gene omics information

Query gene ID At3g62410
Gene name CP12-2
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g62410825414CP12-2CP12-2 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. CP12-2 is coordinately regulated by light with the photosynthetic GAPDH and PRK. The annotation of this gene is based on article 32494.S.X.H.G.
0.5773.8At1g14150837974oxygen evolving enhancer 3 (PsbQ) family proteinF:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;PS.X.H.G.
0.5773.8At5g20935832218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPOS.X.H.G.
0.4457.2At1g70760843413CRR23 ((chlororespiratory reduction 23)a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.S.X.H.G.
0.3338.1At3g19800821517unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3338.1At5g58260835938-Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.099.2GSM297381At.StarchSD.WTSS3.SS3R1D8GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
9.699.1GSM133730Buchanan-Wollaston_A-2-bwoll-C5G_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
9.599.1GSM260879A2-Greco-WTGSE10322Higher order transcriptional regulation conferred by the bountiful gain of function mutant
9.499.1E-ATMX-32-raw-cel-1562974681
9.299.1E-ATMX-32-raw-cel-1562974621
9.199.1GSM131154AtGen_C-4_1-C-12_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
8.999.0E-ATMX-32-raw-cel-1562974409
8.999.0GSM297380At.StarchSD.WTSS3.SS3R1D4GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
8.899.0E-TABM-21-raw-cel-529816160
8.899.0GSM297390At.StarchSD.WTSS3.WTR1D4GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.451e-1479At2g47400819353CP12-1CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. The annotation of this gene is based on article 32494.C.G.S.X.
0.052e-136At1g76560843989CP12-3F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOC.G.S.X.
0.018e-134At5g48390834894ATZIP4Defective in meiotic chromosome segregationC.G.S.X.
0.048e-134At5g43210834339endo/excinuclease amino terminal domain-containing proteinF:nuclease activity;P:DNA repair;C:intracellular;OMFPBVC.G.S.X.
0.018e-134At3g43300823405ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7)AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome.C.G.S.X.
0.028e-134At3g29290822586emb2076 (embryo defective 2076)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POFMBAC.G.S.X.
0.028e-134At1g10810837624aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+034Glycine maxPsAffx.C19000038_atPsAffx.C19000038--2e+0At3g11230yippee family proteinC.G.S.X.
0.099e-236Hordeum vulgareContig3353_s_atContig3353--3e-1At3g62410CP12-2C.G.S.X.
0.082e-654Oryza sativaOs01g0303000AK058929.1-CP12 protein-like protein2e-6At3g62410CP12-2C.G.S.X.
0.083e-756Populus trichocarpaPtp.5163.2.S1_s_atCV281456--5e-25At1g49970CLPR1C.G.S.X.
0.048e-134Triticum aestivumTaAffx.30365.1.S1_atCA625851--1e+0At3g62410CP12-2C.G.S.X.
0.114e-650Vitis vinifera1610190_atCF206158.1--2e-12At2g47400CP12-1C.G.S.X.
0.045e+030Zea maysZm.3279.1.A1_atAW497498PIF-like orf1-1e+0At2g40920F-box family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
XGO:0009744A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.
SGO:0018316The oxidation of two peptidyl-cysteine residues to form a peptidyl-L-cystine (dicysteine) in which segments of peptide chain are linked by a disulfide bond; the cross-link may be between different or the same peptide chain.
SGO:0019253The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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