CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62300

Gene name agenet domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At3g62300 825403 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;PMOB S.X. H.G.
0.40 50.8 At2g27040 817246 AGO4 (ARGONAUTE 4) AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens. S.X. H.G.
0.36 43.6 At4g26760 828783 MAP65-2 F:molecular_function unknown;P:anaphase;C:cortical microtubule, preprophase band, phragmoplast;MOBFPAV S.X. H.G.
0.18 11.4 At1g21560 838757 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM S.X. H.G.
0.18 11.4 At3g22790 821850 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV S.X. H.G.
0.18 11.4 At4g11130 826714 RDR2 (RNA-DEPENDENT RNA POLYMERASE 2) Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). S.X. H.G.
0.10 3.4 At5g43990 834422 SUVR2 Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression. S.X. H.G.
0.08 2.3 At3g19590 821496 WD-40 repeat family protein / mitotic checkpoint protein, putative F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
213.5 100.0 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
113.6 99.9 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
96.1 99.9 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.4 99.7 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
30.4 99.7 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
27.9 99.7 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
25.6 99.7 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
25.3 99.6 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
22.9 99.6 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
21.6 99.6 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 1e-12 75 At2g47220 819335 3' exoribonuclease family domain 1 protein-related F:3'-5'-exoribonuclease activity, oxidoreductase activity, RNA binding;P:metabolic process, RNA processing;C:unknown;BOPMAFV C.G. S.X.
0.01 1e-3 46 At2g47230 819336 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFB C.G. S.X.
0.04 4e-3 44 At5g23770 832442 RNA binding F:RNA binding;P:unknown;C:unknown;POBFM C.G. S.X.
0.01 2e-2 42 At5g23780 832443 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;POMBAF C.G. S.X.
0.02 3e-1 38 At5g23800 832445 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;POBM C.G. S.X.
0.04 3e-1 38 At1g11420 837684 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFV C.G. S.X.
0.01 1e+0 36 At5g51950 835270 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA C.G. S.X.
0.01 1e+0 36 At5g06370 830525 NC domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO C.G. S.X.
0.01 1e+0 36 At4g11440 826748 binding F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e+0 34 Glycine max GmaAffx.75209.1.S1_at AI441434 - - 2e-1 At3g23230 ethylene-responsive factor, putative C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HF18O12r_at HF18O12r - - 7e-2 At4g10610 CID12 C.G. S.X.
0.02 2e+0 36 Oryza sativa Os05g0591950 9633.m04854 - - 8e-1 At2g05380 GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM) C.G. S.X.
0.01 6e+0 34 Populus trichocarpa PtpAffx.75853.1.A1_s_at CV255095 hypothetical protein - 6e-1 At1g52390 unknown protein C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.2546.1.S1_at BJ272218 - - 1e-2 At5g22450 unknown protein C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1622593_at CF404412 hypothetical protein LOC100242684 - 2e+0 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6474.2.S1_a_at CA402315 dephospho-CoA kinase - 2e+0 At5g03980 GDSL-motif lipase/hydrolase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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