Gene omics information

Query gene ID At3g62170
Gene name VGDH2 (Vanguard 1 homolog 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g62170825390VGDH2 (Vanguard 1 homolog 2)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOS.X.H.G.
0.9897.8At5g19580832078glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOS.X.H.G.
0.9597.0At1g69940843331PPME1Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.S.X.H.G.
0.9597.0At3g20865821635AGP40 (arabinogalactan-protein 40)Encodes a putative arabinogalactan-protein (AGP40).S.X.H.G.
0.9597.0At5g14380831289AGP6 (Arabinogalactan proteins 6)Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth.S.X.H.G.
0.9396.4At3g28750822507unknown proteinF:unknown;P:unknown;C:endomembrane system;POS.X.H.G.
0.9396.4At1g02790839391PGA4 (POLYGALACTURONASE 4)encodes a exopolygalacturonase.S.X.H.G.
0.9195.6At1g55570842006sks12 (SKU5 Similar 12)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAS.X.H.G.
0.9195.6At2g47050819319invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9195.6At3g01270821142pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
93.299.9E-MEXP-1138-raw-cel-1432773322
92.799.9E-ATMX-35-raw-cel-1574334848
91.999.9GSM106969opr3_OPDA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
90.299.9E-MEXP-1138-raw-cel-1432773386
88.299.9E-MEXP-1138-raw-cel-1432773258
86.199.9E-MEXP-1138-raw-cel-1432773066
85.699.9E-MEXP-1138-raw-cel-1432773194
82.999.9E-MEXP-1138-raw-cel-1432773290
82.799.9E-MEXP-1138-raw-cel-1432773034
82.599.9E-MEXP-1138-raw-cel-1432773162
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.404e-89329At2g47040819318VGD1 (VANGUARD1)Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.C.G.S.X.
0.383e-62240At2g47030819317VGDH1F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.024e-654At3g05610819727pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;OBPFMVAC.G.S.X.
0.042e-552At4g33230829459pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.026e-550At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.C.G.S.X.
0.016e-550At3g49220824083pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMC.G.S.X.
0.011e-242At2g45220819130pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOMC.G.S.X.
0.016e-240At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFC.G.S.X.
0.016e-240At1g11580837701PMEPCRA (METHYLESTERASE PCR A)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.76735.1.S1_atBG405106--8e-4At5g44570unknown proteinC.G.S.X.
0.024e-136Hordeum vulgareHVSMEf0011J16r2_atHVSMEf0011J16r2--1e+0At1g58100TCP family transcription factor, putativeC.G.S.X.
0.022e+036Oryza sativaOsAffx.27667.1.S1_s_at---0C.G.S.X.
0.058e-240Populus trichocarpaPtpAffx.202816.1.S1_atpmrna5585hypothetical protein-5e-2At3g62170VGDH2 (Vanguard 1 homolog 2)C.G.S.X.
0.026e-240Triticum aestivumTa.9398.2.S1_atBQ802572--3e-17At1g30330ARF6 (AUXIN RESPONSE FACTOR 6)C.G.S.X.
0.022e-550Vitis vinifera1615574_atCB977067hypothetical protein LOC100245304-7e-9At2g45220pectinesterase family proteinC.G.S.X.
0.012e+034Zea maysZm.8848.1.A1_atBM075900--1e-2At5g44570unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00422Link to KaPPA-View 4Carbohydrate esterases
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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