CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62160

Gene name transferase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At3g62160 825389 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.81 90.4 At1g05310 837030 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVA S.X. H.G.
0.80 89.8 At1g58370 842206 RXF12 Encodes a protein with xylanase activity. S.X. H.G.
0.76 87.4 At5g03260 831887 LAC11 (laccase 11) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.73 85.5 At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein S.X. H.G.
0.67 81.6 At5g19870 832108 unknown protein F:unknown;P:unknown;C:endomembrane system;MP S.X. H.G.
0.67 81.6 At5g38610 833851 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.65 79.6 At5g01930 831699 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA S.X. H.G.
0.62 77.3 At5g45970 834637 ARAC2 (ARABIDOPSIS RAC-LIKE 2) Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family. S.X. H.G.
0.61 76.7 At1g54790 841920 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
389.0 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
258.7 100.0 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
240.9 100.0 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
171.3 100.0 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
130.3 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
128.9 99.9 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
111.5 99.9 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
82.0 99.9 GSM184921 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
70.2 99.9 GSM184634 Arabidopsis, root cells, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
67.1 99.8 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e+0 34 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. C.G. S.X.
0.02 3e+0 34 At5g62950 836415 catalytic/ nucleotide binding F:catalytic activity, nucleotide binding;P:cellular metabolic process;C:cellular_component unknown;MFPO C.G. S.X.
0.01 3e+0 34 At5g17790 831647 VAR3 (VARIEGATED 3) Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. C.G. S.X.
0.01 3e+0 34 At5g66850 836819 MAPKKK5 member of MEKK subfamily C.G. S.X.
0.01 3e+0 34 At2g39110 818497 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 3e+0 34 At1g67860 843113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e+0 34 At1g78020 844137 senescence-associated protein-related F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.02 1e+1 32 At5g64720 836593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 1e+1 32 At5g24990 832569 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max GmaAffx.90076.1.S1_at CF805801 - - 1e+0 At4g01220 - C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig10869_s_at Contig10869 - - 6e+0 At5g62300 40S ribosomal protein S20 (RPS20C) C.G. S.X.
0.03 3e-1 38 Oryza sativa Os03g0446200 9631.m03259 - - 1e+0 At3g43840 oxidoreductase, acting on the CH-CH group of donors C.G. S.X.
0.17 4e-18 93 Populus trichocarpa PtpAffx.98699.1.S1_at DN484006 - - 3e-18 At3g62160 transferase family protein C.G. S.X.
0.03 1e+1 32 Triticum aestivum TaAffx.81313.1.S1_at CA687608 - - 2e+1 At5g19150 carbohydrate kinase family C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1622104_at BQ799828 hypothetical protein LOC100248622 - 3e-4 At5g42500 disease resistance-responsive family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.4793.4.A1_x_at BM340717 hypothetical protein LOC100193376 - 7e-5 At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00355 Acyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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