CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62110

Gene name glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g62110 825384 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAV S.X. H.G.
0.44 57.2 At1g25290 839113 ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA S.X. H.G.
0.43 55.3 At3g20320 821576 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. S.X. H.G.
0.41 52.4 At1g06820 837193 CRTISO (CAROTENOID ISOMERASE) Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene. S.X. H.G.
0.39 48.4 At1g15710 838140 prephenate dehydrogenase family protein F:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:chloroplast;BOFPAM S.X. H.G.
0.37 45.0 At5g48830 834941 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO S.X. H.G.
0.35 41.6 At3g57560 824923 aspartate/glutamate/uridylate kinase family protein encodes a N-acetylglutamate kinase, involved in arginine biosynthesis S.X. H.G.
0.35 41.6 At4g31040 829231 proton extrusion protein-related F:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOF S.X. H.G.
0.32 35.7 At3g60620 825233 phosphatidate cytidylyltransferase family protein F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:chloroplast, membrane, chloroplast envelope;BOMFP S.X. H.G.
0.32 35.7 At3g02660 821282 emb2768 (EMBRYO DEFECTIVE 2768) F:RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBFMPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.5 99.6 E-MEXP-265-raw-cel-414619001
18.4 99.5 E-MEXP-265-raw-cel-414619106
17.4 99.5 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
14.8 99.4 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
14.7 99.4 E-MEXP-265-raw-cel-414619318
13.2 99.4 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.3 99.3 E-MEXP-265-raw-cel-414618900
10.0 99.2 Millenaar_A3_LL_Rep1_ATH1
10.0 99.2 E-MEXP-265-raw-cel-414619375
9.8 99.1 E-MEXP-265-raw-cel-414618585
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-5 52 At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.08 3e-3 44 At3g16850 820938 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA C.G. S.X.
0.01 4e-2 40 At4g02940 828132 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
0.04 2e-1 38 At5g41870 834192 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.06 2e-1 38 At4g33440 829481 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV C.G. S.X.
0.03 2e-1 38 At4g23500 828450 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cell wall;FPBOMA C.G. S.X.
0.01 7e-1 36 At5g10370 830901 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related F:in 6 functions;P:unknown;C:intracellular, chloroplast;MBOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e+0 36 Glycine max GmaAffx.17518.2.S1_at AW705533 - - 1e+0 At4g33440 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.08 2e-9 63 Hordeum vulgare Contig8101_at Contig8101 - - 5e-9 At3g62110 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.08 1e-3 46 Oryza sativa Os03g0833800 AK066209.1 - Glycoside hydrolase, family 28 protein 1e-3 At3g62110 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.33 3e-25 117 Populus trichocarpa PtpAffx.211674.1.S1_at pmrna22885 hypothetical protein - 2e-25 At3g62110 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.07 1e-5 52 Triticum aestivum Ta.4469.1.S1_at BJ219557 - - 2e-5 At3g62110 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1622883_at CB341913 hypothetical protein LOC100268076 - 1e-6 At4g24940 SAE1A (SUMO-ACTIVATING ENZYME 1A) C.G. S.X.
0.07 3e-4 46 Zea mays Zm.7001.1.A1_at CO526482 hypothetical protein LOC100273574 - 1e-18 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00412 Glycoside Hydrolase
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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