CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g62040

Gene name catalytic/ hydrolase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA S.X. H.G.
0.75 86.9 At2g28780 817427 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;BPO S.X. H.G.
0.67 81.6 At1g32450 840139 NRT1.5 (NITRATE TRANSPORTER 1.5) Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. S.X. H.G.
0.50 65.3 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO S.X. H.G.
0.43 55.3 At4g33420 829479 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.1 99.8 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.5 99.8 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.4 99.7 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
37.3 99.7 E-MEXP-635-raw-cel-912819824
37.2 99.7 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
35.0 99.7 E-MEXP-635-raw-cel-912819840
31.9 99.7 GSM131413 AtGen_6-8723_Woundingstress-Roots-0.25h_Rep1 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
31.7 99.7 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.1 99.7 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
29.4 99.7 E-MEXP-791-raw-cel-1122937578
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 2e-3 44 At5g59480 836067 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA C.G. S.X.
0.06 9e-2 38 At5g02230 831784 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA C.G. S.X.
0.01 9e-2 38 At4g02680 828205 EOL1 (ETO1-LIKE 1) Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5. C.G. S.X.
0.01 4e-1 36 At3g04580 819614 EIN4 (ETHYLENE INSENSITIVE 4) Ethylene receptor, subfamily 2. Has serine kinase activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 6e-10 65 Glycine max Gma.12309.1.S1_at AW396278 - - 7e-10 At3g62040 catalytic/ hydrolase C.G. S.X.
0.07 3e-6 52 Hordeum vulgare Contig6491_at Contig6491 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.10 5e-8 59 Oryza sativa OsAffx.3667.1.S1_at - - - 0 C.G. S.X.
0.10 8e-3 42 Populus trichocarpa PtpAffx.31506.1.S1_at BU818105 hypothetical protein - 9e-3 At3g62040 catalytic/ hydrolase C.G. S.X.
0.11 1e-13 77 Triticum aestivum Ta.11599.3.S1_at CA606661 - - 8e-14 At3g62040 catalytic/ hydrolase C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1618012_at CD798497 - - 4e+0 At4g08868 unknown protein C.G. S.X.
0.03 6e-1 34 Zea mays ZmAffx.485.1.S1_at AI691349 - - 8e-1 Atmg00140 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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