CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g61890

Gene name ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At3g61890 825362 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. S.X. H.G.
0.89 94.6 At2g46680 819280 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response. S.X. H.G.
0.86 93.1 At5g57050 835809 ABI2 (ABA INSENSITIVE 2) Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo. S.X. H.G.
0.75 86.9 At2g41190 818718 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV S.X. H.G.
0.73 85.5 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
114.6 99.9 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
114.3 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
108.8 99.9 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
105.3 99.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
102.6 99.9 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
76.3 99.9 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
71.3 99.9 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
68.3 99.9 GSM131304 AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
66.2 99.8 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
62.6 99.8 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 2e-45 182 At2g46680 819280 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response. C.G. S.X.
0.08 1e-7 57 At1g26960 839587 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.01 6e-3 42 At5g11390 831010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.04 6e-3 42 At1g27050 839594 ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.03 2e-2 40 At5g39750 833971 AGL81 (AGAMOUS-LIKE 81) F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:nucleus;PO C.G. S.X.
0.02 2e-2 40 At3g24860 822084 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:biological_process unknown;C:chloroplast;POMVFB C.G. S.X.
0.03 2e-2 40 At2g01760 814707 ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) member of Response Regulator: B- Type C.G. S.X.
0.02 2e-2 40 At2g36420 818216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 6e-16 85 Glycine max GmaAffx.1785.1.S1_at BF325331 - - 3e-24 At2g46680 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) C.G. S.X.
0.04 1e-2 40 Hordeum vulgare HVSMEc0001C18f2_s_at HVSMEc0001C18f2 - - 7e-1 At2g43018 CPuORF17 (Conserved peptide upstream open reading frame 17) C.G. S.X.
0.04 7e-1 36 Oryza sativa OsAffx.8770.1.S1_at - - - 0 C.G. S.X.
0.11 1e-4 48 Populus trichocarpa Ptp.3162.1.S1_at CK109623 - - 1e-4 At3g61890 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) C.G. S.X.
0.04 4e-1 36 Triticum aestivum Ta.16524.1.S1_at CA607751 MADS-box transcription factor TaAGL11 - 1e-1 At3g61890 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) C.G. S.X.
0.06 2e-6 52 Vitis vinifera 1610657_at CB978484 hypothetical protein LOC100241332 - 2e-22 At1g69780 ATHB13 C.G. S.X.
0.04 4e-2 38 Zea mays ZmAffx.760.1.A1_at AI734521 - - 1e+1 At5g42591 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
X GO:0045941 Any process that activates or increases the frequency, rate or extent of transcription.
X GO:0006970 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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