CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g61790

Gene name seven in absentia (SINA) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.69 82.9 At3g61790 825352 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF S.X. H.G.
0.69 82.9 At5g10960 830963 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF S.X. H.G.
0.63 78.1 At5g02040 831904 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF S.X. H.G.
0.61 76.7 At2g23780 816910 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV S.X. H.G.
0.57 73.8 At1g16180 838187 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO S.X. H.G.
0.56 73.0 At4g13270 826957 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.55 70.6 At1g64040 842708 TOPP3 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. S.X. H.G.
0.53 68.6 At5g22360 832297 ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. S.X. H.G.
0.53 68.6 At4g26240 828730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.53 68.6 At4g22750 828372 zinc finger (DHHC type) family protein F:zinc ion binding;P:unknown;C:endomembrane system;MOFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.0 99.5 GSM131175 AtGen_D-7_1-UL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
13.0 99.4 GSM131215 AtGen_D-17_2-DL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
12.2 99.3 GSM131205 AtGen_D-39_3-UL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
12.1 99.3 GSM131186 AtGen_D-19_2-PL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
11.7 99.3 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
11.6 99.3 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
11.3 99.3 GSM131169 AtGen_D-1_1-DL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
11.3 99.3 GSM131207 AtGen_D-41_3-DS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
11.3 99.3 GSM131171 AtGen_D-3_1-PL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
11.2 99.2 GSM131208 AtGen_D-42_3-FS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 8e-80 297 At5g53360 835417 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:endomembrane system, nucleus;MPO C.G. S.X.
0.62 7e-65 248 At4g27880 828901 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:mitochondrion, nucleus;MPOF C.G. S.X.
0.27 6e-19 95 At3g58040 824973 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) Encodes a RING finger domain containing protein that interacts with AtRAP2.2. C.G. S.X.
0.28 2e-18 93 At2g41980 818798 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF C.G. S.X.
0.02 3e-2 40 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV C.G. S.X.
0.02 5e-1 36 At3g03910 821072 GDH3 (GLUTAMATE DEHYDROGENASE 3) GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development. C.G. S.X.
0.02 2e+0 34 At5g16770 831540 AtMYB9 (myb domain protein 9) Member of the R2R3 factor gene family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 4e-36 153 Glycine max Gma.5088.2.S1_at CA937805 - - 4e-36 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.45 1e-27 123 Hordeum vulgare Contig14690_at Contig14690 - - 4e-27 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.41 8e-20 99 Oryza sativa Os02g0293400 AK072985.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 6e-45 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.53 4e-104 379 Populus trichocarpa PtpAffx.19537.2.S1_s_at CV225503 hypothetical protein - 4e-104 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.34 1e-51 204 Triticum aestivum Ta.29541.1.S1_at CK196948 - - 3e-50 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.38 3e-61 234 Vitis vinifera 1609250_at Y18471.1 SINA1p - 2e-60 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.38 7e-26 117 Zea mays Zm.378.1.S1_at CO532007 seven in absentia homolog - 3e-25 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04120 Ubiquitin mediated proteolysis
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