Gene omics information

Query gene ID At3g61770
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6680.1At3g61770825350-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPS.X.H.G.
0.5673.0At5g24020832467MINDEncodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus. Its ATPase activity is stimulated by AtMinE1, a topological specificity factor.S.X.H.G.
0.5570.6At3g46100823753ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1)histidyl-tRNA synthetaseS.X.H.G.
0.5469.5At3g60620825233phosphatidate cytidylyltransferase family proteinF:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:chloroplast, membrane, chloroplast envelope;BOMFPS.X.H.G.
0.5368.6At1g19800838568TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.S.X.H.G.
0.5368.6At5g48830834941unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOS.X.H.G.
0.5368.6At1g06820837193CRTISO (CAROTENOID ISOMERASE)Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.S.X.H.G.
0.5267.4At4g20960827843cytidine/deoxycytidylate deaminase family proteinencodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesisS.X.H.G.
0.5267.4At5g20130832135unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOBS.X.H.G.
0.5166.3At1g53120841746RNA-binding S4 domain-containing proteinF:RNA binding;P:biological_process unknown;C:chloroplast;BOPMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.199.4GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.999.3GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.599.0GSM142870GW001_ATH1_A15-Warre-2caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
8.399.0GSM142866GW001_ATH1_A11-Warre-6caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
8.198.9GSM131755Quick_A28_1-2hr_Rep2_ATH1GSE5636Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
7.698.9GSM142871GW001_ATH1_A16-Warre-2caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
7.498.8GSM133254RIKEN-GODA11B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
7.498.8GSM269494mkk1/mkk2, no-treatment, rep-AGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.044e-136At1g67600843081-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOPC.G.S.X.
0.012e+034At4g19050827643ATP binding / protein bindingF:protein binding, ATP binding;P:apoptosis;C:cellular_component unknown;PMBOFVAC.G.S.X.
0.012e+034At4g31210829248DNA topoisomerase family proteinF:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;OBMFAPVC.G.S.X.
0.032e+034At3g21610821715-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPC.G.S.X.
0.032e+034At2g35730818143heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:endomembrane system;PC.G.S.X.
0.022e+034At2g40240818616pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.012e+034At2g31660817722SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)SAD2 (super sensitive to ABA and drought 2) encodes an importin beta-domain family protein likely to be involved in nuclear transport in ABA signaling. Subcellular localization of GFP-tagged SAD2 showed a predominantly nuclear localization, consistent with a role for SAD2 in nuclear transport. Mutation of SAD2 in Arabidopsis alters abscisic acid sensitivity. SAD2 was ubiquitously expressed at low levels in all tissues except flowers. SAD2 expression was not induced by ABA or stress. Loss of function mutations in SAD2 exhibit increased tolerance for UV stress, increased production of UV protective secondary metabolites and suppression of nuclear localization of MYB4 (a repressor of UV stress response genes).C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.144e-550Glycine maxGmaAffx.47038.1.S1_atBI470973--3e-5At3g61770-C.G.S.X.
0.031e+130Hordeum vulgareHD08F08r_atHD08F08r--7e-1At5g26673-C.G.S.X.
0.021e+132Oryza sativaOs06g05876009634.m03702--2e+0At3g60570ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)C.G.S.X.
0.331e-38161Populus trichocarpaPtpAffx.202266.1.S1_atpmrna4536hypothetical protein-6e-39At3g61770-C.G.S.X.
0.022e+034Triticum aestivumTaAffx.78561.1.S1_atCA730824--7e-2At4g31860protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
0.032e-342Vitis vinifera1615827_atBQ792666hypothetical protein LOC100252878-1e+0At3g22360AOX1BC.G.S.X.
0.023e+032Zea maysZm.12627.1.S1_atCA831553--1e+0At1g43630unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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