CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g61550

Gene name zinc finger (C3HC4-type RING finger) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.91 95.6 At3g61550 825328 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.89 94.6 At2g26910 817232 PDR4 (PLEIOTROPIC DRUG RESISTANCE 4) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPV S.X. H.G.
0.89 94.6 At4g25960 828702 PGP2 (P-GLYCOPROTEIN 2) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV S.X. H.G.
0.75 86.9 At1g17840 838363 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix. S.X. H.G.
0.75 86.9 At2g26250 817165 KCS10 (3-KETOACYL-COA SYNTHASE 10) epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle. S.X. H.G.
0.57 73.8 At3g20820 821630 leucine-rich repeat family protein F:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.5 99.8 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
42.1 99.8 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
37.1 99.7 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
20.4 99.6 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
18.3 99.5 E-MEXP-1304-raw-cel-1530618649
17.8 99.5 GSM131188 AtGen_D-21_2-BL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
17.5 99.5 GSM131185 AtGen_D-18_2-FL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
16.6 99.5 GSM131190 AtGen_D-23_2-UL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
16.3 99.5 E-MEXP-1304-raw-cel-1530619052
15.7 99.5 E-MEXP-1304-raw-cel-1530618613
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 5e-40 165 At2g46160 819223 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.04 8e-5 48 At2g37000 818274 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:chloroplast;P C.G. S.X.
0.02 2e-2 40 At5g03680 831757 PTL (PETAL LOSS) Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs. C.G. S.X.
0.04 2e-2 40 At5g62210 836342 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA C.G. S.X.
0.02 2e-2 40 At3g18035 821328 HON4 A linker histone like protein C.G. S.X.
0.03 2e-2 40 At2g24260 816961 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.02 8e-2 38 At5g53800 835461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.03 8e-2 38 At5g21280 832258 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPOFBVA C.G. S.X.
0.03 8e-2 38 At3g52440 824409 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 7e-6 52 Glycine max GmaAffx.48199.1.S1_at BE658865 - - 2e-20 At2g46160 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HM14H20r_at HM14H20r - - 4e+0 At4g20390 integral membrane family protein C.G. S.X.
0.03 6e-1 36 Oryza sativa Os01g0736600 AK099546.1 - The start codon is not identified. 2e-1 At2g46160 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.21 2e-3 44 Populus trichocarpa PtpAffx.202234.1.S1_at pmrna4482 hypothetical protein - 1e-8 At2g46160 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.23494.1.S1_at CA734549 - - 5e-1 At5g63480 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621746_at CD003963 hypothetical protein LOC100261012 - 4e-4 At5g64230 unknown protein C.G. S.X.
0.03 5e-1 34 Zea mays Zm.3780.1.S1_at AW438304 low-molecular-weight cysteine-rich protein LCR69 - 9e-2 At1g47317 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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