Gene omics information

Query gene ID At3g61520
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g61520825325pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
0.5368.6At1g16280838197DEAD/DEAH box helicase, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.5267.4At1g75200843857flavodoxin family protein / radical SAM domain-containing proteinF:in 6 functions;P:unknown;C:unknown;MBOFPAS.X.H.G.
0.4963.5At5g60990836220DEAD/DEAH box helicase, putative (RH10)F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.4862.5At2g22400816771NOL1/NOP2/sun family proteinF:unknown;P:unknown;C:cellular_component unknown;BOMFAPS.X.H.G.
0.4761.2At3g22310821800PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1)Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.S.X.H.G.
0.4761.2At1g10490837589unknown proteinF:unknown;P:unknown;C:cellular_component unknown;BMOFAPS.X.H.G.
0.4761.2At5g64420836563DNA polymerase V familyF:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPVS.X.H.G.
0.4659.8At1g72320843564APUM23 (Arabidopsis Pumilio 23)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.4659.8At2g31060817658elongation factor family proteinF:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:intracellular;BOMPFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
72.999.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
71.399.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
66.399.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
63.399.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
60.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
58.399.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
52.299.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
51.599.8GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
51.599.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.199.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9904458At5g28460832933pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.9704213At5g28370832922pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.017e-240At2g32630817823pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.027e-240At1g50930841515unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFVBC.G.S.X.
0.013e-138At5g14420831293RGLG2 (RING domain Ligase2)F:ubiquitin-protein ligase activity;P:N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process;C:plasma membrane;MOPVFBC.G.S.X.
0.013e-138At4g12740826886adenine-DNA glycosylase-related / MYH-relatedF:hydrolase activity, 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:unknown;MOBFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.017e-344Glycine maxPsAffx.C72000050_atPsAffx.C72000050--3e-3At4g14380unknown proteinC.G.S.X.
0.012e+034Hordeum vulgareContig25984_atContig25984--9e-1At4g24380unknown proteinC.G.S.X.
0.026e-138Oryza sativaOs03g0324300AK103227.1-EIL39e-2At5g21120EIL2 (ETHYLENE-INSENSITIVE3-LIKE 2)C.G.S.X.
0.041e-140Populus trichocarpaPtpAffx.211568.1.S1_atpmrna22675hypothetical protein-7e-2At5g28460pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.021e+036Triticum aestivumTaAffx.24874.1.S1_atCA710703--7e+0At3g09940MDHAR (MONODEHYDROASCORBATE REDUCTASE)C.G.S.X.
0.021e+034Vitis vinifera1616203_atCB343761hypothetical protein LOC100248931-1e+0At1g76940RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.022e+034Zea maysZmAffx.1083.1.A1_atAI974922--1e+0At1g59830PP2A-1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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