CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g61450

Gene name SYP73 (SYNTAXIN OF PLANTS 73)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g61450 825318 SYP73 (SYNTAXIN OF PLANTS 73) syntaxin of plants 73 (SYP73) S.X. H.G.
0.80 89.8 At5g52620 835339 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At3g13820 820594 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.73 85.5 At2g32630 817823 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA S.X. H.G.
0.72 84.8 At3g05780 819747 LON3 (LON PROTEASE 3) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins. S.X. H.G.
0.72 84.8 At5g01280 831711 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBVPA S.X. H.G.
0.67 81.6 At2g43220 818923 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOB S.X. H.G.
0.64 78.9 At5g46370 834680 KCO2 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2) Encodes AtTPK2 (KCO2), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK2 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo. S.X. H.G.
0.63 78.1 At3g21000 821651 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO S.X. H.G.
0.63 78.1 At1g07060 837217 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
362.2 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
244.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
241.1 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
209.3 100.0 E-ATMX-35-raw-cel-1574334832
198.6 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
182.9 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
181.5 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
174.4 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
172.4 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
169.2 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-2 40 At4g32580 829393 thioredoxin family protein F:unknown;P:cell redox homeostasis;C:cellular_component unknown;BOMPFAV C.G. S.X.
0.06 3e-2 40 At3g45280 823666 SYP72 (SYNTAXIN OF PLANTS 72) syntaxin of plants 72 (SYP72) C.G. S.X.
0.05 3e-2 40 At3g09740 820132 SYP71 (SYNTAXIN OF PLANTS 71) syntaxin of plants 71 (SYP71) C.G. S.X.
0.02 2e+0 34 At5g26980 832756 SYP41 (SYNTAXIN OF PLANTS 41) member of SYP4 Gene Family C.G. S.X.
0.02 2e+0 34 At5g26667 832710 PYR6 encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase. C.G. S.X.
0.01 2e+0 34 At4g10560 826648 MEE53 (maternal effect embryo arrest 53) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-1 38 Glycine max Gma.8643.3.S1_at CA784901 - - 7e-5 At3g09740 SYP71 (SYNTAXIN OF PLANTS 71) C.G. S.X.
0.03 2e-4 46 Hordeum vulgare Contig5046_at Contig5046 - - 3e-6 At3g45280 SYP72 (SYNTAXIN OF PLANTS 72) C.G. S.X.
0.04 8e-1 36 Oryza sativa Os05g0553700 AK103396.1 - Syntaxin 71 (AtSYP71) 2e-19 At3g09740 SYP71 (SYNTAXIN OF PLANTS 71) C.G. S.X.
0.15 2e-6 54 Populus trichocarpa PtpAffx.211558.1.S1_at pmrna22649 hypothetical protein - 2e-6 At3g61450 SYP73 (SYNTAXIN OF PLANTS 73) C.G. S.X.
0.06 7e-3 42 Triticum aestivum Ta.6402.1.S1_at CK151576 - - 2e-1 At3g45280 SYP72 (SYNTAXIN OF PLANTS 72) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619683_at CF373178 hypothetical protein LOC100263488 - 6e-2 At5g44894 unknown protein C.G. S.X.
0.03 4e-2 38 Zea mays Zm.15460.1.S1_at CF631770 syntaxin 72 - 1e-2 At3g45280 SYP72 (SYNTAXIN OF PLANTS 72) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04130 SNARE interactions in vesicular transport
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage