Gene omics information

Query gene ID At3g61450
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g61450825318SYP73 (SYNTAXIN OF PLANTS 73)syntaxin of plants 73 (SYP73)S.X.H.G.
0.8089.8At5g52620835339F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7888.6At3g13820820594F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.7385.5At2g32630817823pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
0.7284.8At3g05780819747LON3 (LON PROTEASE 3)Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.S.X.H.G.
0.7284.8At5g01280831711-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBVPAS.X.H.G.
0.6781.6At2g43220818923DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOBS.X.H.G.
0.6478.9At5g46370834680KCO2 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2)Encodes AtTPK2 (KCO2), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK2 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.S.X.H.G.
0.6378.1At3g21000821651unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOS.X.H.G.
0.6378.1At1g07060837217unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
362.2100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
241.1100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
182.9100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
172.4100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-240At4g32580829393thioredoxin family proteinF:unknown;P:cell redox homeostasis;C:cellular_component unknown;BOMPFAVC.G.S.X.
0.063e-240At3g45280823666SYP72 (SYNTAXIN OF PLANTS 72)syntaxin of plants 72 (SYP72)C.G.S.X.
0.053e-240At3g09740820132SYP71 (SYNTAXIN OF PLANTS 71)syntaxin of plants 71 (SYP71)C.G.S.X.
0.022e+034At5g26980832756SYP41 (SYNTAXIN OF PLANTS 41)member of SYP4 Gene FamilyC.G.S.X.
0.022e+034At5g26667832710PYR6encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase.C.G.S.X.
0.012e+034At4g10560826648MEE53 (maternal effect embryo arrest 53)F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-138Glycine maxGma.8643.3.S1_atCA784901--7e-5At3g09740SYP71 (SYNTAXIN OF PLANTS 71)C.G.S.X.
0.032e-446Hordeum vulgareContig5046_atContig5046--3e-6At3g45280SYP72 (SYNTAXIN OF PLANTS 72)C.G.S.X.
0.048e-136Oryza sativaOs05g0553700AK103396.1-Syntaxin 71 (AtSYP71)2e-19At3g09740SYP71 (SYNTAXIN OF PLANTS 71)C.G.S.X.
0.152e-654Populus trichocarpaPtpAffx.211558.1.S1_atpmrna22649hypothetical protein-2e-6At3g61450SYP73 (SYNTAXIN OF PLANTS 73)C.G.S.X.
0.067e-342Triticum aestivumTa.6402.1.S1_atCK151576--2e-1At3g45280SYP72 (SYNTAXIN OF PLANTS 72)C.G.S.X.
0.032e+032Vitis vinifera1619683_atCF373178hypothetical protein LOC100263488-6e-2At5g44894unknown proteinC.G.S.X.
0.034e-238Zea maysZm.15460.1.S1_atCF631770syntaxin 72-1e-2At3g45280SYP72 (SYNTAXIN OF PLANTS 72)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

04130Link to KEGG PATHWAYSNARE interactions in vesicular transport
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