Gene omics information

Query gene ID At3g61400
Gene name 2-oxoglutarate-dependent dioxygenase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At3g614008253122-oxoglutarate-dependent dioxygenase, putative1-aminocyclopropane-1-carboxylate oxidase-like proteinS.X.H.G.
0.8994.6At5g52680835345heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFVS.X.H.G.
0.7385.5At5g52670835344heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PS.X.H.G.
0.7385.5At5g52710835348heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVAS.X.H.G.
0.6781.6At5g52690835346heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PS.X.H.G.
0.6176.7At3g28510822481AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
336.6100.0GSM218587Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
336.2100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
288.6100.0GSM184509Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
250.6100.0GSM184503Pericycle root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
237.6100.0GSM184508Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
211.7100.0GSM184505Pericycle root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
143.899.9GSM184498Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
114.399.9GSM184545Whole roots 2hr KNO3 treated then frozen, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
96.699.9GSM184559Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
94.499.9GSM218586Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.574e-94345At1g034108387632A6F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFMC.G.S.X.
0.416e-41169At1g034008387512-oxoglutarate-dependent dioxygenase, putativeA single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.C.G.S.X.
0.546e-38159At1g066208371712-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.141e-1171At1g066508371752-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.176e-1065At2g254508170832-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseC.G.S.X.
0.141e-861At2g308308176342-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.164e-859At2g308408176352-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.096e-446At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e-242Glycine maxGmaAffx.64967.2.S1_atAW311203--4e-3At1g066502-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.023e-136Hordeum vulgareHA10G16u_s_atHA10G16u--8e-1At5g14440-C.G.S.X.
0.032e-242Oryza sativaOs02g0630300AK059045.1-2OG-Fe(II) oxygenase domain containing protein4e-3At1g066502-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.075e-240Populus trichocarpaPtpAffx.211009.1.S1_atpmrna21633hypothetical protein-3e-2At3g614002-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.054e-240Triticum aestivumTaAffx.80306.1.S1_atCA698528--4e-3At1g120101-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeC.G.S.X.
0.034e-238Vitis vinifera1614550_atCB969128hypothetical protein LOC100247670-1e-1At3g614002-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.026e-238Zea maysZm.5898.1.A1_atCF631996hyoscyamine 6-dioxygenase-2e-1At1g80610unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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